CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
peroxisome 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93602
EER94425
EER99285
EER99630
EES01060
EES04804
EES06648
KXG19452
KXG22580
KXG22856
KXG32999
KXG33152
KXG33416
KXG36107

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	EER93602	AT1G12920.1	21798944
AT2G42790.1	EER99630	AT1G12920.1	21798944
AT2G42790.1	EER99285	AT1G76150.1	21798944
AT2G42790.1	KXG36107	AT1G76150.1	21798944
AT2G42790.1	EER94425	AT2G35500.1	21798944
AT2G42790.1	EES06648	AT3G16120.1	21798944
AT2G42790.1	KXG33416	AT3G16120.1	21798944
AT2G42790.1	KXG22856	AT3G56900.1	21798944
AT2G42790.1	EES04804	AT3G58750.1	21798944
AT2G42790.1	EES01060	AT5G55190.1	21798944
AT2G42790.1	KXG22580	AT5G55190.1	21798944
AT2G42790.1	KXG32999	AT5G55190.1	21798944
AT3G58740.1	EES04804	AT2G42790.1	21798944
AT3G58750.1	KXG19452	AT1G25420.1	21798944
AT3G58750.1	KXG33152	AT1G25420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016248_P001	Maize	mitochondrion	95.05	95.43
TraesCS5B01G416700.1	Wheat	golgi	92.67	93.04
TraesCS5D01G422000.1	Wheat	unclear	92.48	92.84
TraesCS5A01G413300.1	Wheat	mitochondrion	91.88	92.25
Os02t0232400-01	Rice	nucleus, plastid	89.7	90.6
HORVU5Hr1G099820.5	Barley	plastid	89.9	88.67
CDX79848	Canola	cytosol	37.23	85.07
CDY15651	Canola	nucleus	29.7	84.27
GSMUA_Achr10P...	Banana	mitochondrion	75.84	80.46
CDX98329	Canola	cytosol, peroxisome, plastid	79.21	78.9
PGSC0003DMT400020128	Potato	plastid	80.2	78.79
VIT_12s0142g00610.t01	Wine grape	plastid	79.8	78.71
Bra007417.1-P	Field mustard	cytosol	78.81	78.5
CDY49252	Canola	cytosol	78.61	78.3
Solyc12g011000.1.1	Tomato	nucleus	79.6	78.21
AT2G42790.1	Thale cress	cytosol	78.81	78.19
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	78.61	78.15
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	78.42	77.95
AT3G58750.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	79.21	77.82
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	78.61	77.69
Solyc07g055840.2.1	Tomato	nucleus, unclear	78.61	77.69
CDY50821	Canola	cytosol	78.42	77.65
CDX79851	Canola	cytosol	78.02	77.25
Bra004720.1-P	Field mustard	cytosol	78.02	77.25
PGSC0003DMT400044692	Potato	plastid	77.23	76.32
Bra007416.1-P	Field mustard	cytosol	66.34	74.61
KRH14452	Soybean	nucleus	74.85	73.97
CDY49249	Canola	cytosol	68.51	73.62
KRH73702	Soybean	cytosol, plastid	74.46	73.44
KRH46090	Soybean	endoplasmic reticulum, nucleus	74.46	73.29
KRG98876	Soybean	nucleus, plastid	74.06	72.76
Bra014554.1-P	Field mustard	cytosol	65.94	70.85
CDY00587	Canola	cytosol	65.94	70.85
AT3G58740.1	Thale cress	cytosol	67.33	70.83
CDX71926	Canola	cytosol	64.16	67.64
HORVU0Hr1G030280.2	Barley	cytosol	21.98	61.67
CDX89002	Canola	endoplasmic reticulum, golgi	33.66	60.07
CDY49250	Canola	extracellular	8.32	51.85
VIT_06s0080g00770.t01	Wine grape	cytosol	20.4	48.58
CDX71928	Canola	cytosol	67.52	41.23
KXG29695	Sorghum	mitochondrion	20.99	22.46

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	EntrezGene:8073811	UniProt:C5XYK7	InterPro:Citrate_synth-like_lrg_a-sub
InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf	EnsemblPlants:EES04804
ProteinID:EES04804	ProteinID:EES04804.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142
InterPro:IPR016143	PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739
PANTHER:PTHR11739:SF4	EnsemblPlantsGene:SORBI_3004G101900	SUPFAM:SSF48256	unigene:Sbi.1037	UniParc:UPI0001A85929	RefSeq:XP_002451828.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:9417187..9422351

Molecular Weight (calculated)

55280.5 Da

IEP (calculated)

9.569

GRAVY (calculated)

-0.198

Length

505 amino acids

Sequence
(BLAST)

001: MDRADPARGR LAVLSSHLRA GGAVAGEAAG LERSPVSAAA PGPRAGALAV VDGRTGKRHE VKVSEDGTVR ATDFKKITAG KDDKGLKIYD PGYLNTAPVR
101: STICYIDGDE GILRYRGYPI EELAESSSFV EVAYLLMYGN LPTQSQLASW EFAISQHSAV PQGLLDIIQS MPHDAHPMGV LASAMSTLSV FHPDANPALK
201: GQDLYKSKQV RDKQIVRVLG KAPTIAAAAY LRLAGRPPIL PSNTLSYSEN FLYMLDSLGN KSYKPNPRLA RALDILFILH AEHEMNCSTA AVRHLASSGV
301: DVFTALSGGV GALYGPLHGG ANEAVLKMLN EIGSVENIPD FIEGVKNRKR KMSGFGHRVY KNYDPRAKVI RKLSEEVFSI VGRDPLIEVA IALEKAALSD
401: EYFVKRKLYP NVDFYSGLIY RAMGFPTEFF PVLFAIPRMA GWLAHWKESL DDPDTKIMRP QQVYTGAWLR HYTPVRERVL PSQSEELGQI ATSNATRRRR
501: AGSAL

Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)

001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL

Arabidopsis Description

CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.