Factsheet for Bra014554.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004720.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58740.1	Bra004720.1-P	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007416.1-P	Field mustard	cytosol	77.23	80.85
CDX89002	Canola	endoplasmic reticulum, golgi	47.66	79.15
AT3G58740.1	Thale cress	cytosol	77.45	75.83
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	80.64	74.61
Bra007417.1-P	Field mustard	cytosol	80.43	74.56
Bra004720.1-P	Field mustard	cytosol	78.09	71.96
Solyc12g011000.1.1	Tomato	nucleus	74.89	68.48
VIT_12s0142g00610.t01	Wine grape	plastid	74.47	68.36
PGSC0003DMT400020128	Potato	plastid	74.47	68.09
Os02t0232400-01	Rice	nucleus, plastid	72.34	68.0
TraesCS5B01G416700.1	Wheat	golgi	71.49	66.8
TraesCS5D01G422000.1	Wheat	unclear	71.28	66.6
TraesCS5A01G413300.1	Wheat	mitochondrion	71.06	66.4
Solyc07g055840.2.1	Tomato	nucleus, unclear	72.13	66.34
Zm00001d016248_P001	Maize	mitochondrion	70.64	66.0
EES04804	Sorghum	mitochondrion	70.85	65.94
PGSC0003DMT400044692	Potato	plastid	71.49	65.75
KRH14452	Soybean	nucleus	71.06	65.36
GSMUA_Achr10P...	Banana	mitochondrion	65.96	65.13
KRH73702	Soybean	cytosol, plastid	70.21	64.45
HORVU5Hr1G099820.5	Barley	plastid	70.21	64.45
KRH46090	Soybean	endoplasmic reticulum, nucleus	70.0	64.13
KRG98876	Soybean	nucleus, plastid	68.94	63.03
CDY49250	Canola	extracellular	9.57	55.56
HORVU0Hr1G030280.2	Barley	cytosol	20.0	52.22
VIT_06s0080g00770.t01	Wine grape	cytosol	20.43	45.28
Bra000351.1-P	Field mustard	cytosol	21.06	22.3
Bra014513.1-P	Field mustard	mitochondrion	22.13	22.03
Bra037657.1-P	Field mustard	mitochondrion	21.91	21.68

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	EnsemblPlantsGene:Bra014554	EnsemblPlants:Bra014554.1	EnsemblPlants:Bra014554.1-P
InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143	UniProt:M4DDI6
PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4
SUPFAM:SSF48256	UniParc:UPI0002543FEC	:	:	:	:

Description

AT3G58750 (E=1e-219) CSY2 | CSY2 (citrate synthase 2); citrate (SI)-synthase

Coordinates

chrA04:+:1426586..1431373

Molecular Weight (calculated)

52106.6 Da

IEP (calculated)

7.701

GRAVY (calculated)

-0.215

Length

470 amino acids

Sequence
(BLAST)

001: MERGIARLAV LSAHLEVSDQ VLPPAIEPWC TSGASEPHGS LKGSLTIVDE RTGKKYQVPV AEDGTVKSID LKKITMGKDD KGIKLYDPGY LNTAPVRSSI
101: SYIDGDEGIL RYRGYPIEEL AESSTFLEVA YLLIYGNLPS KSQLADWELA ISQHSAVPQG LLDMIQSMPQ DAYPTSAFDS AMSALSLFHP DANPAHMGPD
201: VYKSGQVRDK QIFRILGQAP TIAAAAFLRT VGKPPVLPLS NLSYTENLLY MLNSMGNRYY KPNPRLARVM DIIFILHCEH EMNCSTAAAR HLSSSGVDVY
301: TAIGGATGAL NGALHGGAVE AVPKMLSEIG SVENIPEFIE CVKNKKRKLY GFGHRIYRNY DPRAKFLKKL ADEVFSIVGK DPLVEVAVAL EKTALSNEYF
401: VRRKLYPNVD FYSGLVYRAM GVPSHFTRVS RLAGYLSHWR ESLDDPDTKI MRPQQAYNGV WLRHYEPVRE

Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)

001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL

Arabidopsis Description

CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,golgi,plasma membrane,vacuole,endoplasmic reticulum,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.