Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 3
- mitochondrion 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G58740.1 | CDX79848 | AT2G42790.1 | 21798944 |
| AT3G58740.1 | CDX79851 | AT2G42790.1 | 21798944 |
| AT3G58740.1 | CDY15651 | AT2G42790.1 | 21798944 |
| AT3G58740.1 | CDY50821 | AT2G42790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15651 | Canola | nucleus | 51.85 | 23.6 |
| CDX79848 | Canola | cytosol | 51.85 | 19.0 |
| CDX89002 | Canola | endoplasmic reticulum, golgi | 49.38 | 14.13 |
| CDY49249 | Canola | cytosol | 56.79 | 9.79 |
| Bra014554.1-P | Field mustard | cytosol | 55.56 | 9.57 |
| AT3G58740.1 | Thale cress | cytosol | 55.56 | 9.38 |
| CDY00587 | Canola | cytosol | 53.09 | 9.15 |
| CDX98329 | Canola | cytosol, peroxisome, plastid | 56.79 | 9.07 |
| CDX67764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole | 56.79 | 9.06 |
| TraesCS5B01G416700.1 | Wheat | golgi | 55.56 | 8.95 |
| TraesCS5A01G413300.1 | Wheat | mitochondrion | 55.56 | 8.95 |
| TraesCS5D01G422000.1 | Wheat | unclear | 55.56 | 8.95 |
| CDY49252 | Canola | cytosol | 55.56 | 8.88 |
| CDX79851 | Canola | cytosol | 55.56 | 8.82 |
| GSMUA_Achr10P... | Banana | mitochondrion | 51.85 | 8.82 |
| CDX71925 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.56 | 8.81 |
| Os02t0232400-01 | Rice | nucleus, plastid | 54.32 | 8.8 |
| HORVU5Hr1G099820.5 | Barley | plastid | 55.56 | 8.79 |
| CDY50821 | Canola | cytosol | 54.32 | 8.63 |
| VIT_12s0142g00610.t01 | Wine grape | plastid | 54.32 | 8.59 |
| Solyc12g011000.1.1 | Tomato | nucleus | 53.09 | 8.37 |
| PGSC0003DMT400020128 | Potato | plastid | 53.09 | 8.37 |
| EES04804 | Sorghum | mitochondrion | 51.85 | 8.32 |
| Solyc07g055840.2.1 | Tomato | nucleus, unclear | 51.85 | 8.22 |
| PGSC0003DMT400044692 | Potato | plastid | 51.85 | 8.22 |
| Zm00001d016248_P001 | Maize | mitochondrion | 50.62 | 8.15 |
| KRH14452 | Soybean | nucleus | 50.62 | 8.02 |
| KRH46090 | Soybean | endoplasmic reticulum, nucleus | 50.62 | 7.99 |
| KRG98876 | Soybean | nucleus, plastid | 50.62 | 7.98 |
| CDX71926 | Canola | cytosol | 46.91 | 7.93 |
| KRH73702 | Soybean | cytosol, plastid | 49.38 | 7.81 |
| CDX71928 | Canola | cytosol | 58.02 | 5.68 |
| CDX71183 | Canola | mitochondrion | 12.35 | 3.37 |
| CDX83429 | Canola | mitochondrion | 18.52 | 3.16 |
| CDX95601 | Canola | mitochondrion | 18.52 | 3.16 |
| CDY42662 | Canola | mitochondrion | 17.28 | 2.97 |
| CDX89047 | Canola | mitochondrion | 17.28 | 2.97 |
| CDY23428 | Canola | mitochondrion | 17.28 | 2.95 |
| CDY30465 | Canola | mitochondrion | 17.28 | 2.95 |
| CDX77720 | Canola | cytosol | 4.94 | 1.97 |
| CDY69998 | Canola | plastid | 3.7 | 1.82 |
| VIT_06s0080g00770.t01 | Wine grape | cytosol | 3.7 | 1.42 |
| HORVU0Hr1G030280.2 | Barley | cytosol | 2.47 | 1.11 |
| CDY58554 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY49250 | EnsemblPlantsGene:GSBRNA2T00092641001 | Gene3D:1.10.580.10 | GO:A0A078IEG1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016740 | GO:GO:0046912 | InterPro:Citrate_synth-like_lrg_a-sub | InterPro:Citrate_synthase | InterPro:Citrate_synthase_sf | InterPro:IPR016142 |
| PANTHER:PTHR11739 | PANTHER:PTHR11739:SF4 | ProteinID:CDY49250 | ProteinID:CDY49250.1 | SignalP:SignalP-noTM | SUPFAM:SSF48256 |
| UniParc:UPI0004EE1F8B | UniProt:A0A078IEG1 | MapMan:35.1 | : | : | : |
Description
BnaA09g55290DBnaA09g55290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEG1]
Coordinates
chrLK032820:-:69717..70884
Molecular Weight (calculated)
9362.4 Da
IEP (calculated)
7.414
GRAVY (calculated)
-0.342
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MNQSLWKPMA MSFWICSSEA ATQPWAMGVP PQFTAVAPMA GYLAHWRESL DDPDNKIMRP QQVYTGVCLR HYEPMKERTI M
001: MEISERARAR LAVLNAHLTV SEPNQVLPAI EPWCTSAHIT AAPHGSLKGN LKIVDERTGN EYQVPVSEHG TVKTVDLKKI TTGKDDKGLN LYDPGYLNTA
101: PVRSSISYID GDEGILRYRG YPVEELAEKS TYTEVTYLLI YGNLPSQRQL ADWEFAISQN SAVPQGVLDM IQSMPNDVHP VGALVTAMSA LSIFYPDANP
201: SLMGLGVYKS KQVRDKQIVR VLGQAPTIAA AAYLRKAGKP PVQPLSNLSY SENFLYMVES MGDRSYKPNP RLARVLDILF ILQAEHEMNC STAAARHLSS
301: SGGDVYTAVS GGVGAIYGPL HGGAVEATIN MLSEIGTVEN IPEFIESVKN KKRRLSGFGH RIYKNYDPRG KVVKKLADEV FSILGRDPLV EVGDALEKAA
401: LSDEYFVKRK LYPNVDFYSG LINRAMGIPS SFTAVSRIAG YLSHWRESLD DPDTKIMRPQ QVYTGAGIRH YETVRERTKL
101: PVRSSISYID GDEGILRYRG YPVEELAEKS TYTEVTYLLI YGNLPSQRQL ADWEFAISQN SAVPQGVLDM IQSMPNDVHP VGALVTAMSA LSIFYPDANP
201: SLMGLGVYKS KQVRDKQIVR VLGQAPTIAA AAYLRKAGKP PVQPLSNLSY SENFLYMVES MGDRSYKPNP RLARVLDILF ILQAEHEMNC STAAARHLSS
301: SGGDVYTAVS GGVGAIYGPL HGGAVEATIN MLSEIGTVEN IPEFIESVKN KKRRLSGFGH RIYKNYDPRG KVVKKLADEV FSILGRDPLV EVGDALEKAA
401: LSDEYFVKRK LYPNVDFYSG LINRAMGIPS SFTAVSRIAG YLSHWRESLD DPDTKIMRPQ QVYTGAGIRH YETVRERTKL
Arabidopsis Description
CSY1Citrate synthase 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.