CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77720	Canola	cytosol	48.48	39.41
CDY58554	Canola	cytosol	7.27	9.6
CDY49249	Canola	cytosol	18.18	6.38
CDY49252	Canola	cytosol	19.39	6.31
CDX98329	Canola	cytosol, peroxisome, plastid	19.39	6.31
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	19.39	6.3
CDY50821	Canola	cytosol	19.39	6.27
CDX79851	Canola	cytosol	19.39	6.27
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.39	6.26
CDX71926	Canola	cytosol	17.58	6.05
CDY00587	Canola	cytosol	16.97	5.96
CDX89047	Canola	mitochondrion	16.36	5.72
CDY42662	Canola	mitochondrion	16.36	5.72
VIT_03s0088g00560.t01	Wine grape	cytosol	3.64	5.61
CDY30465	Canola	mitochondrion	15.76	5.47
CDX95601	Canola	mitochondrion	15.76	5.47
CDX83429	Canola	mitochondrion	15.76	5.47
CDX71183	Canola	mitochondrion	9.7	5.39
CDY23428	Canola	mitochondrion	15.15	5.26
CDY15651	Canola	nucleus	4.85	4.49
CDX89002	Canola	endoplasmic reticulum, golgi	7.27	4.24
CDX79848	Canola	cytosol	5.45	4.07
CDY49250	Canola	extracellular	1.82	3.7
CDX71928	Canola	cytosol	17.58	3.51

Protein Annotations

EnsemblPlants:CDY69998	EnsemblPlantsGene:GSBRNA2T00094243001	ProteinID:CDY69998	ProteinID:CDY69998.1	SEG:seg	UniParc:UPI0004EE7657
UniProt:A0A078JQY2	MapMan:35.2	:	:	:	:

Description

BnaCnng66280DBnaCnng66280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQY2]

Coordinates

chrLK040894:-:2768..3290

Molecular Weight (calculated)

17971.4 Da

IEP (calculated)

8.774

GRAVY (calculated)

-0.033

Length

165 amino acids

Sequence
(BLAST)

001: MCVTGCGVRP NTLSGPNIEE PSAINYFDAV EPSGRRRRDL CSASRYSTSS AHSTIFCSVS FLLCNSLGDK SQSRLSLAVR RRDMCFRFGV CVTRPVTLWG
101: TPHRSAVPVN INHSDSLSHN VCYSGPMTVK YSTSVVATLQ IPRSMSSWLD LLSASLTIST VGFPD

Best Arabidopsis Sequence Match ( AT3G51490.3 )
(BLAST)

001: MSLIGATLIT TFSGPVSDKV GRRSMLILSS VLYFLSSIVM FWSPNVYVLL FARLLDGFGI GLAVTLVPIY ISETAPSEIR GLLNTFPQFC GSGGMFLSYC
101: LVFGMSLQES PSWRLMLGVL SIPSIAYFVL AAFFLPESPR WLVSKGRMDE ARQVLQRLRG REDVSGELAL LVEGLGVGKD TSIEEYVIGP DNEENEGGNE
201: LPRKDQIKLY GPEDGQSWMA KPVKGQSSLA LASRQGSMLP RGGSLMDPLV TLFGSIHENL PSENMNASSR SMLFPNMGSI LGMMGRQESQ WDPERNNEDS
301: SDQDENLNSP LLSPQTTEPD DYHQRTVGTM HRRQSSLFMA NVGETATATS IGGGWQLAWK YNDKVGADGK RVNGGLQRMY IHEETANNNT NNIPFSRRGS
401: LLSFHPEGDG HDQVNGYVQA AALVSQASMM PGGKGETAML PKEVKDGPGW RELKEPGVKR ALMVGVGLQI LQQFAGINGV MYYTPQILEE TGVSSLLTNL
501: GISAESASLL ISALTTLLML PCILVSMRLM DVTGRRSLML STIPILILSL VTLVIGSLVN LGGSINALIS TASVTVYLSC FVMGFGAIPN ILCSEIFPTS
601: VRGLCITICA LTFWICDIIV TYTLPVMLKS IGIAGVFGIY AIVCAVAWVF VYLKVPETKG MPLEVISEFF SVGAKQQDAA ASFLSDG

Arabidopsis Description

TMT3Tonoplast monosaccharide transporter3 [Source:UniProtKB/TrEMBL;Acc:F4J4E8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.