Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0080g00770.t01 | Wine grape | cytosol | 36.45 | 18.4 |
| VIT_12s0142g00610.t01 | Wine grape | plastid | 38.32 | 8.01 |
| CDY69998 | Canola | plastid | 5.61 | 3.64 |
| VIT_13s0156g00180.t01 | Wine grape | mitochondrion | 14.02 | 3.18 |
| CDX77720 | Canola | cytosol | 4.67 | 2.46 |
| CDX71183 | Canola | mitochondrion | 3.74 | 1.35 |
Protein Annotations
| ArrayExpress:VIT_03s0088g00560 | EMBL:FN595512 | EnsemblPlants:VIT_03s0088g00560.t01 | EnsemblPlantsGene:VIT_03s0088g00560 | Gene3D:1.10.580.10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016740 | GO:GO:0046912 | InterPro:Citrate_synth-like_lrg_a-sub | InterPro:Citrate_synthase | InterPro:Citrate_synthase_sf |
| InterPro:IPR016142 | PANTHER:PTHR11739 | PANTHER:PTHR11739:SF4 | PFAM:PF00285 | ProteinID:CCB49627 | ProteinID:CCB49627.1 |
| SEG:seg | SUPFAM:SSF48256 | UniParc:UPI0002108D5A | UniProt:F6HBP5 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3:-:8763759..8765911
Molecular Weight (calculated)
12343.8 Da
IEP (calculated)
8.947
GRAVY (calculated)
-0.350
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVAHRTPWN KENCNMEKWI KVAFFRGRGH SLCTLTQEND TTIYYLLLLV CLLGSNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH LSSRTSEQGS
101: SSTYNLH
101: SSTYNLH
001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV
Arabidopsis Description
CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.