CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79848
CDX79851
CDY15651
CDY50821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58740.1	CDX79848	AT2G42790.1	21798944
AT3G58740.1	CDX79851	AT2G42790.1	21798944
AT3G58740.1	CDY15651	AT2G42790.1	21798944
AT3G58740.1	CDY50821	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79848	Canola	cytosol	53.71	68.78
CDY15651	Canola	nucleus	41.34	65.73
CDY49250	Canola	extracellular	14.13	49.38
Bra014554.1-P	Field mustard	cytosol	79.15	47.66
CDY00587	Canola	cytosol	73.14	44.04
CDY49249	Canola	cytosol	63.96	38.51
CDX98329	Canola	cytosol, peroxisome, plastid	66.43	37.08
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	66.43	37.01
AT3G58740.1	Thale cress	cytosol	62.54	36.88
CDX71926	Canola	cytosol	62.19	36.74
CDY49252	Canola	cytosol	65.72	36.69
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.72	36.4
CDY50821	Canola	cytosol	65.02	36.08
CDX79851	Canola	cytosol	64.66	35.88
Os02t0232400-01	Rice	nucleus, plastid	62.19	35.2
VIT_12s0142g00610.t01	Wine grape	plastid	63.6	35.16
Solyc12g011000.1.1	Tomato	nucleus	63.25	34.82
Solyc07g055840.2.1	Tomato	nucleus, unclear	62.54	34.64
PGSC0003DMT400020128	Potato	plastid	62.9	34.63
PGSC0003DMT400044692	Potato	plastid	62.19	34.44
KRH14452	Soybean	nucleus	62.19	34.44
TraesCS5B01G416700.1	Wheat	golgi	60.78	34.19
KRH46090	Soybean	endoplasmic reticulum, nucleus	61.84	34.11
TraesCS5A01G413300.1	Wheat	mitochondrion	60.42	34.0
TraesCS5D01G422000.1	Wheat	unclear	60.42	34.0
KRH73702	Soybean	cytosol, plastid	61.13	33.79
EES04804	Sorghum	mitochondrion	60.07	33.66
KRG98876	Soybean	nucleus, plastid	61.13	33.66
HORVU5Hr1G099820.5	Barley	plastid	60.78	33.59
Zm00001d016248_P001	Maize	mitochondrion	59.01	33.2
GSMUA_Achr10P...	Banana	mitochondrion	51.94	30.88
VIT_06s0080g00770.t01	Wine grape	cytosol	19.08	25.47
CDX71928	Canola	cytosol	63.6	21.77
CDX89047	Canola	mitochondrion	22.61	13.56
CDY30465	Canola	mitochondrion	22.61	13.47
CDY23428	Canola	mitochondrion	22.61	13.47
CDX83429	Canola	mitochondrion	22.61	13.47
CDX95601	Canola	mitochondrion	22.61	13.47
CDY42662	Canola	mitochondrion	22.26	13.35
CDX71183	Canola	mitochondrion	9.89	9.43
CDX77720	Canola	cytosol	5.3	7.39
CDY69998	Canola	plastid	4.24	7.27
CDY58554	Canola	cytosol	2.83	6.4
HORVU0Hr1G030280.2	Barley	cytosol	3.89	6.11

Protein Annotations

Gene3D:1.10.230.10	MapMan:5.7.3.6.1	GO:A0A078DJB6	EnsemblPlants:CDX89002	ProteinID:CDX89002	ProteinID:CDX89002.1
InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00149115001	InterPro:IPR016143	PFAM:PF00285	PRINTS:PR00143	ScanProsite:PS00480
PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	SignalP:SignalP-noTM	UniPathway:UPA00223	UniParc:UPI0004EEE348

Description

BnaA04g01840D

Coordinates

chrLK031857:-:448298..452340

Molecular Weight (calculated)

32372.6 Da

IEP (calculated)

9.475

GRAVY (calculated)

-0.052

Length

283 amino acids

Sequence
(BLAST)

001: MLIFHVIGML VCLRCGLKIQ FENFVSKIKL LENVILYKNI LFPFLKDFEY KIKQSYWLVN LEVHSRDKLT ALVSPNPRLA RVMDIIFILH CEHEMNCSTA
101: AARHLSSSGV DVYTAIGGAT GALNGALHGG AVEAVPKMLS EIGSVENIPE FIECVKNKKR KLYGFGHRIY RNYDPRAKFL KKLADEVFSI VGKDPLVEVA
201: VALEKTALSN EYFVRRKLYP NVDFYSGLVY RAMGVPSHFT RVSRLAGYLS HWRESLDDPD TKIMRPQQAY NGVWLRHYEP VRE

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.