CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67764
CDX71925
CDX72100
CDX73237
CDX87634
CDX94450
CDX97722
CDX98329
CDY06600
CDY17309
CDY19907
CDY20779
CDY21074
CDY27182
CDY30135
CDY32125
CDY34600
CDY49252
CDY61809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	CDY21074	AT1G12920.1	21798944
AT2G42790.1	CDY34600	AT1G12920.1	21798944
AT2G42790.1	CDX73237	AT1G76150.1	21798944
AT2G42790.1	CDX87634	AT1G76150.1	21798944
AT2G42790.1	CDX94450	AT2G35500.1	21798944
AT2G42790.1	CDY32125	AT2G35500.1	21798944
AT2G42790.1	CDY61809	AT2G35500.1	21798944
AT2G42790.1	CDX97722	AT3G16120.1	21798944
AT2G42790.1	CDY30135	AT3G16120.1	21798944
AT2G42790.1	CDX72100	AT3G56900.1	21798944
AT2G42790.1	CDY27182	AT3G56900.1	21798944
AT2G42790.1	CDX67764	AT3G58750.1	21798944
AT2G42790.1	CDX71925	AT3G58750.1	21798944
AT2G42790.1	CDX98329	AT3G58750.1	21798944
AT2G42790.1	CDY49252	AT3G58750.1	21798944
AT2G42790.1	CDY06600	AT5G55190.1	21798944
AT2G42790.1	CDY17309	AT5G55190.1	21798944
AT2G42790.1	CDY19907	AT5G55190.1	21798944
AT2G42790.1	CDY20779	AT5G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15651	Canola	nucleus	80.54	100.0
CDX89002	Canola	endoplasmic reticulum, golgi	68.78	53.71
CDY49250	Canola	extracellular	19.0	51.85
Bra004720.1-P	Field mustard	cytosol	100.0	43.33
CDX79851	Canola	cytosol	100.0	43.33
CDY50821	Canola	cytosol	99.09	42.94
AT2G42790.1	Thale cress	cytosol	94.12	40.86
CDX98329	Canola	cytosol, peroxisome, plastid	91.86	40.04
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	91.4	39.76
CDY49252	Canola	cytosol	90.95	39.65
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.95	39.33
Os02t0232400-01	Rice	nucleus, plastid	86.88	38.4
PGSC0003DMT400020128	Potato	plastid	88.69	38.13
Solyc12g011000.1.1	Tomato	nucleus	88.24	37.94
VIT_12s0142g00610.t01	Wine grape	plastid	87.78	37.89
GSMUA_Achr10P...	Banana	mitochondrion	80.54	37.4
Solyc07g055840.2.1	Tomato	nucleus, unclear	86.43	37.38
TraesCS5B01G416700.1	Wheat	golgi	85.07	37.38
TraesCS5A01G413300.1	Wheat	mitochondrion	85.07	37.38
EES04804	Sorghum	mitochondrion	85.07	37.23
PGSC0003DMT400044692	Potato	plastid	85.97	37.18
TraesCS5D01G422000.1	Wheat	unclear	84.62	37.18
KRH14452	Soybean	nucleus	85.07	36.79
Zm00001d016248_P001	Maize	mitochondrion	83.71	36.78
HORVU5Hr1G099820.5	Barley	plastid	85.07	36.72
KRH73702	Soybean	cytosol, plastid	83.71	36.13
KRH46090	Soybean	endoplasmic reticulum, nucleus	81.9	35.28
KRG98876	Soybean	nucleus, plastid	81.0	34.82
CDY49249	Canola	cytosol	71.49	33.62
CDY00587	Canola	cytosol	68.78	32.34
CDX71926	Canola	cytosol	63.35	29.23
CDX71928	Canola	cytosol	71.95	19.23
VIT_06s0080g00770.t01	Wine grape	cytosol	15.84	16.51
CDY42662	Canola	mitochondrion	25.79	12.08
CDX83429	Canola	mitochondrion	25.79	12.0
CDX95601	Canola	mitochondrion	25.79	12.0
CDX89047	Canola	mitochondrion	25.34	11.86
CDY23428	Canola	mitochondrion	25.34	11.79
CDY30465	Canola	mitochondrion	25.34	11.79
CDX71183	Canola	mitochondrion	11.76	8.75
CDX77720	Canola	cytosol	7.69	8.37
CDY69998	Canola	plastid	4.07	5.45
HORVU0Hr1G030280.2	Barley	cytosol	0.9	1.11
CDY58554	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	GO:A0A078CXI5	EnsemblPlants:CDX79848	ProteinID:CDX79848
ProteinID:CDX79848.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00132696001	InterPro:IPR016142	InterPro:IPR016143
PFAM:PF00285	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256
UniPathway:UPA00223	UniParc:UPI0004EF0A97	:	:	:	:

Description

BnaA05g03080D

Coordinates

chrLK031819:-:476058..477307

Molecular Weight (calculated)

24579.5 Da

IEP (calculated)

9.675

GRAVY (calculated)

-0.268

Length

221 amino acids

Sequence
(BLAST)

001: MNCSTAAARH LASSGVDVYT AVAGAVGALY GPLHGGANEA VLKMLSEIGS VDNIPEFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD
101: PLIEVAVALE KAALSDDYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AIPRMAGYLS HWKESLDDPD TKIMRPQQVY TGVWLRHYTP VKERDEPKES
201: DKLSQVSTSN ASRRRLAGSS V

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.