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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 6
  • vacuole 1
  • mitochondrion 2
  • peroxisome 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, peroxisome, plastid, vacuole
BaCelLo:plastid
ChloroP:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:cytosol, peroxisome
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG90825
KRG94758
KRG95023
KRG98876
KRH06769
KRH08442
KRH09439
KRH09878
KRH14452
KRH23441
KRH35947
KRH37825
KRH38906
KRH46090
KRH49412
KRH51640
KRH52483
KRH52484
KRH52485
KRH60966
KRH61808
KRH61809
KRH61811
KRH66657
KRH70101
KRH73702
KRH74369

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42790.1 KRG94758 AT1G12920.1 21798944
AT2G42790.1 KRH06769 AT1G12920.1 21798944
AT2G42790.1 KRH08442 AT1G12920.1 21798944
AT2G42790.1 KRH09439 AT1G12920.1 21798944
AT2G42790.1 KRH38906 AT1G12920.1 21798944
AT2G42790.1 KRH70101 AT1G12920.1 21798944
AT2G42790.1 KRH51640 AT1G76150.1 21798944
AT2G42790.1 KRH60966 AT1G76150.1 21798944
AT2G42790.1 KRH49412 AT2G35500.1 21798944
AT2G42790.1 KRH74369 AT2G35500.1 21798944
AT2G42790.1 KRH09878 AT3G16120.1 21798944
AT2G42790.1 KRH23441 AT3G16120.1 21798944
AT2G42790.1 KRG95023 AT3G56900.1 21798944
AT2G42790.1 KRH37825 AT3G56900.1 21798944
AT2G42790.1 KRH66657 AT3G56900.1 21798944
AT2G42790.1 KRG98876 AT3G58750.1 21798944
AT2G42790.1 KRH14452 AT3G58750.1 21798944
AT2G42790.1 KRH46090 AT3G58750.1 21798944
AT2G42790.1 KRH73702 AT3G58750.1 21798944
AT2G42790.1 KRH52483 AT5G55190.1 21798944
AT2G42790.1 KRH52484 AT5G55190.1 21798944
AT2G42790.1 KRH52485 AT5G55190.1 21798944
AT2G42790.1 KRH61808 AT5G55190.1 21798944
AT2G42790.1 KRH61809 AT5G55190.1 21798944
AT2G42790.1 KRH61811 AT5G55190.1 21798944
AT3G58740.1 KRG98876 AT2G42790.1 21798944
AT3G58740.1 KRH14452 AT2G42790.1 21798944
AT3G58740.1 KRH46090 AT2G42790.1 21798944
AT3G58740.1 KRH73702 AT2G42790.1 21798944
AT3G58750.1 KRG90825 AT1G25420.1 21798944
AT3G58750.1 KRH35947 AT1G25420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH46090 Soybean endoplasmic reticulum, nucleus 95.33 95.52
KRH73702 Soybean cytosol, plastid 83.07 83.4
KRH14452 Soybean nucleus 82.49 82.97
CDX79848 Canola cytosol 34.82 81.0
CDY15651 Canola nucleus 27.24 78.65
VIT_12s0142g00610.t01 Wine grape plastid 76.07 76.37
Solyc07g055840.2.1 Tomato nucleus, unclear 75.29 75.73
PGSC0003DMT400020128 Potato plastid 75.49 75.49
Bra007417.1-P Field mustard cytosol 74.32 75.35
AT3G58750.1 Thale cress endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 75.29 75.29
Solyc12g011000.1.1 Tomato nucleus 75.29 75.29
AT2G42790.1 Thale cress cytosol 74.51 75.25
CDX67764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 74.32 75.2
CDY49252 Canola cytosol 74.12 75.15
Bra003355.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 74.12 75.0
CDX98329 Canola cytosol, peroxisome, plastid 73.93 74.95
CDY50821 Canola cytosol 74.32 74.9
CDX71925 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 74.32 74.76
CDX79851 Canola cytosol 74.12 74.71
Bra004720.1-P Field mustard cytosol 74.12 74.71
PGSC0003DMT400044692 Potato plastid 74.12 74.56
GSMUA_Achr10P... Banana mitochondrion 68.87 74.37
TraesCS5A01G413300.1 Wheat mitochondrion 72.76 74.35
TraesCS5B01G416700.1 Wheat golgi 72.57 74.16
TraesCS5D01G422000.1 Wheat unclear 72.57 74.16
EES04804 Sorghum mitochondrion 72.76 74.06
Zm00001d016248_P001 Maize mitochondrion 72.37 73.96
Os02t0232400-01 Rice nucleus, plastid 71.4 73.4
HORVU5Hr1G099820.5 Barley plastid 71.98 72.27
Bra007416.1-P Field mustard cytosol 62.65 71.71
CDY49249 Canola cytosol 64.98 71.06
CDY00587 Canola cytosol 63.03 68.94
Bra014554.1-P Field mustard cytosol 63.03 68.94
AT3G58740.1 Thale cress cytosol 63.03 67.5
CDX71926 Canola cytosol 60.7 65.14
CDX89002 Canola endoplasmic reticulum, golgi 33.66 61.13
HORVU0Hr1G030280.2 Barley cytosol 17.9 51.11
CDY49250 Canola extracellular 7.98 50.62
VIT_06s0080g00770.t01 Wine grape cytosol 19.46 47.17
CDX71928 Canola cytosol 63.81 39.66
KRH13859 Soybean mitochondrion 21.79 23.73
KRH43565 Soybean mitochondrion 21.79 23.73
Protein Annotations
Gene3D:1.10.230.10Gene3D:1.10.580.10EntrezGene:100805556MapMan:5.7.3.6.1EMBL:ACUP02010930InterPro:Citrate_synth-like_lrg_a-sub
InterPro:Citrate_synth-like_sm_a-subInterPro:Citrate_synthaseInterPro:Citrate_synthase_ASInterPro:Citrate_synthase_bac-typInterPro:Citrate_synthase_sfEnsemblPlantsGene:GLYMA_18G104400
GO:GO:0003674GO:GO:0003824GO:GO:0006091GO:GO:0006099GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016740GO:GO:0046912InterPro:IPR016142InterPro:IPR016143UniProt:K7MR36
EnsemblPlants:KRG98876ProteinID:KRG98876ProteinID:KRG98876.1PFAM:PF00285PIRSF:PIRSF001369PRINTS:PR00143
ScanProsite:PS00480PANTHER:PTHR11739PANTHER:PTHR11739:SF4SUPFAM:SSF48256UniParc:UPI000233E3FD:
Description
hypothetical protein
Coordinates
chr18:-:11482927..11506669
Molecular Weight (calculated)
56674.2 Da
IEP (calculated)
9.766
GRAVY (calculated)
-0.227
Length
514 amino acids
Sequence
(BLAST)
001: MSKTTTSSSE QTARNRLATL AAHLLPSDAA SATAILRPHR LSAPAGSSPP VNLKGTVTVV DERTGKKYQI EVTPDGTVRA SDFKKISTGK NDKGLKLYDP
101: GYLNTAPVIS RISYIDGDAG ILRYRGYPIE DLAEKSSFME VSYLIMYGNL PSESQLTEWE FTISQHSAVP QGVLDMIQSM PHDAHPMGML VNAMSALSVY
201: HPDANPALKG LDIYNSKQVR DKQVARVIGK ITTIAAAINL RLAGRPPVLP SNKLSYTENF LYMLDSFGNR SYKPNPRLTR ALDIIFILHA EHEMNCSTSA
301: VRHLSSSGVD VYTAIAGAVG ALYGPLHGGA NEAVLKMLSE IGTAENIPAF IEGVKSRKRK LSGFGHRVYK NYDPRAKVLR KLTEEVFTIV GRDPLIEIAV
401: ALEKIALSDE YFIKRKLYPN VDFYSGLIYR AMGFQPEFFT VLFAIPRMAG YLAHWRESLD DPDTKIMRPQ QVYVGEWLRH YAPINQRTTS SNTDKLGQLA
501: VSNASKRRLA GSGA
Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)
001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL
Arabidopsis Description
CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.