CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13859	Soybean	mitochondrion	99.36	99.36
PGSC0003DMT400074559	Potato	mitochondrion	75.85	76.17
VIT_13s0156g00180.t01	Wine grape	mitochondrion	75.0	75.0
Bra014513.1-P	Field mustard	mitochondrion	73.31	73.31
Bra037657.1-P	Field mustard	mitochondrion	73.09	72.63
Bra000351.1-P	Field mustard	cytosol	67.8	72.07
Solyc01g073740.2.1	Tomato	plastid	71.82	71.52
Os02t0194100-01	Rice	mitochondrion	71.4	71.4
TraesCS6B01G194700.1	Wheat	mitochondrion	71.19	71.19
KXG29695	Sorghum	mitochondrion	70.97	70.97
TraesCS6A01G167300.1	Wheat	mitochondrion	70.97	70.97
Zm00001d053685_P002	Maize	mitochondrion	70.55	70.55
TraesCS6D01G155800.1	Wheat	mitochondrion	71.4	67.54
Os11t0538900-01	Rice	mitochondrion	70.55	67.41
Zm00001d053684_P005	Maize	mitochondrion	68.64	66.94
GSMUA_Achr4P19260_001	Banana	mitochondrion	68.86	66.46
HORVU6Hr1G033980.6	Barley	plastid	66.95	64.89
Zm00001d015856_P007	Maize	mitochondrion	64.62	62.5
CDY58554	Canola	cytosol	16.53	62.4
KRH14452	Soybean	nucleus	24.58	22.7
KRH73702	Soybean	cytosol, plastid	23.94	22.07
KRH46090	Soybean	endoplasmic reticulum, nucleus	23.73	21.83
KRG98876	Soybean	nucleus, plastid	23.73	21.79
AT2G11270.1	Thale cress	mitochondrion	3.6	20.48

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	EntrezGene:100781418	MapMan:2.3.1	EMBL:ACUP02004868	InterPro:Citrate_synth-like_lrg_a-sub
InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G157700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004108	GO:GO:0006091	GO:GO:0006099
GO:GO:0006101	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912
UniProt:I1KTQ4	InterPro:IPR016142	InterPro:IPR016143	ProteinID:KRH43564.1	EnsemblPlants:KRH43565	ProteinID:KRH43565
ProteinID:KRH43565.1	PFAM:PF00285	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8
SUPFAM:SSF48256	TIGRFAMs:TIGR01793	UniParc:UPI0002338274	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:12212865..12221381

Molecular Weight (calculated)

52519.2 Da

IEP (calculated)

8.499

GRAVY (calculated)

-0.231

Length

472 amino acids

Sequence
(BLAST)

001: MAFFRSVSAL SRLRSRVGQQ SNLANSVRWL QTPSSSNTDL YSELKELVPE YQERVKKLKK DHGSVELGKI TVDMVLGGMR GMTALVWLGS AVDPDEGIRF
101: RGMSIPECQK KLPGAFPGGE PLPEAVLWLL LTGKIPSKAQ VDSLSQELRS RATIPDYAYK AIDALPVSAH PMTQFTTGVM ALQVQSEFQK AYEGGITKAR
201: YWEPTYEDTM NLIARLPAIA AYIYRRKYKD GKIIPLDDSL DYGANYAHML GFDDPEMLEF MRLYISIHSD HEGGNVSSHT AHLVASPLSD PYLAFAAALN
301: GLAGPLHGLA NQEVLRWIRS IVAEFGTPNI STEQLADYIN KTLSRGQVVP GYGHGVLRQT DPRYTCQREF ALKHLPNDPY FQLVSKIKEV VPPILTKLGK
401: VKNPWPNVDA HSGVLLNYYG LTEENYYTVL FGVSRSFGVG PQLIWDRALG MPLERPKSVT LEKLEQLVAK SS

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.