Factsheet for Os11t0538900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 17189339
mitochondrion: 19010998
mitochondrion: 23027867
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0194100-01	Rice	mitochondrion	92.51	96.82
KXG29695	Sorghum	mitochondrion	90.89	95.13
Zm00001d053685_P002	Maize	mitochondrion	90.89	95.13
TraesCS6B01G194700.1	Wheat	mitochondrion	88.46	92.58
TraesCS6A01G167300.1	Wheat	mitochondrion	88.26	92.37
TraesCS6D01G155800.1	Wheat	mitochondrion	88.46	87.58
Zm00001d053684_P005	Maize	mitochondrion	85.43	87.19
Bra000351.1-P	Field mustard	cytosol	75.1	83.56
VIT_13s0156g00180.t01	Wine grape	mitochondrion	79.76	83.47
HORVU6Hr1G033980.6	Barley	plastid	81.78	82.96
Zm00001d015856_P007	Maize	mitochondrion	81.58	82.58
CDX95601	Canola	mitochondrion	78.54	81.68
CDX83429	Canola	mitochondrion	78.34	81.47
AT2G44350.2	Thale cress	mitochondrion	78.14	81.43
CDY30465	Canola	mitochondrion	78.14	81.26
Bra037657.1-P	Field mustard	mitochondrion	78.14	81.26
CDY23428	Canola	mitochondrion	77.94	81.05
PGSC0003DMT400074559	Potato	mitochondrion	76.32	80.21
CDX89047	Canola	mitochondrion	76.11	79.66
Bra014513.1-P	Field mustard	mitochondrion	76.11	79.66
CDY42662	Canola	mitochondrion	75.91	79.45
AT3G60100.2	Thale cress	mitochondrion	74.29	78.25
Solyc01g073740.2.1	Tomato	plastid	73.89	77.0
GSMUA_Achr4P19260_001	Banana	mitochondrion	75.1	75.87
KRH13859	Soybean	mitochondrion	67.61	70.76
KRH43565	Soybean	mitochondrion	67.41	70.55
Os11t0623601-00	Rice	extracellular	9.51	55.29
Os02t0232400-01	Rice	nucleus, plastid	21.05	20.8

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	UniProt:A0A0P0Y2X7	ProteinID:BAT14323.1	InterPro:Citrate_synth-like_lrg_a-sub
InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004108	GO:GO:0006091	GO:GO:0006099	GO:GO:0006101
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142
InterPro:IPR016143	EnsemblPlantsGene:Os11g0538900	EnsemblPlants:Os11t0538900-01	PFAM:PF00285	PRINTS:PR00143	ScanProsite:PS00480
PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256	TIGRFAMs:TIGR01793	UniParc:UPI000393A90A	SEG:seg

Description

Similar to Citrate synthase. (Os11t0538900-01)

Coordinates

chr11:+:19649312..19655845

Molecular Weight (calculated)

54664.4 Da

IEP (calculated)

8.346

GRAVY (calculated)

-0.153

Length

494 amino acids

Sequence
(BLAST)

001: ERRRVPSSCC FPSASGPPLQ AAMAFFRGLT AVSRIRSRMA QEATTLGGVR WLQMQSPSDL DLKSQLQELI PEQQDRLKKL KSEHGKVQLG NITVDMVLGG
101: MRGMIGMLWE TSLLDPEEGI RFRGLSIPEC QKVLPTAIKG GEPLPEGLLW LLLTGKVPTK EQVDALSKEL VTRSSVPGHV YKAIDALPVT AHPMTQFTTG
201: VMALQVESEF QKAYDKGMPK SKFWEPTYED CLNLIARLPP VASYVYRRIF KDGKTIAADN ALDYAANFSH MLGFDDPKML ELMRLYVTIH TDHEGGNVSA
301: HTGHLVGSAL SDPYLSFAAA LNGLAGPLHG LANQEVLLWI KSVIGETGSD VTTDQLKEYV WKTLKSGKVV PGFGHGVLRK TDPRYTCQRE FALKYLPEDP
401: LFQLVSKLYE VVPPILTELG KVKNPWPNVD AHSGVLLNHF GLSEARYYTV LFGVSRSIGI GSQLIWDRAL GLPLERPKSV TMEWLENHCK KAAA

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.