Factsheet for PGSC0003DMT400074559

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g073740.2.1	Tomato	plastid	94.89	94.09
VIT_13s0156g00180.t01	Wine grape	mitochondrion	87.02	86.65
Bra000351.1-P	Field mustard	cytosol	81.06	85.81
CDY23428	Canola	mitochondrion	86.38	85.47
Bra037657.1-P	Field mustard	mitochondrion	85.96	85.05
CDY30465	Canola	mitochondrion	85.96	85.05
CDX95601	Canola	mitochondrion	85.53	84.63
AT2G44350.2	Thale cress	mitochondrion	85.32	84.6
CDX83429	Canola	mitochondrion	85.11	84.21
AT3G60100.2	Thale cress	mitochondrion	83.83	84.01
Bra014513.1-P	Field mustard	mitochondrion	83.62	83.26
CDX89047	Canola	mitochondrion	83.62	83.26
CDY42662	Canola	mitochondrion	83.19	82.84
KXG29695	Sorghum	mitochondrion	80.43	80.08
Os02t0194100-01	Rice	mitochondrion	80.21	79.87
Zm00001d053685_P002	Maize	mitochondrion	79.57	79.24
TraesCS6B01G194700.1	Wheat	mitochondrion	79.36	79.03
TraesCS6A01G167300.1	Wheat	mitochondrion	78.94	78.6
Os11t0538900-01	Rice	mitochondrion	80.21	76.32
KRH43565	Soybean	mitochondrion	76.17	75.85
KRH13859	Soybean	mitochondrion	75.74	75.42
TraesCS6D01G155800.1	Wheat	mitochondrion	79.36	74.75
GSMUA_Achr4P19260_001	Banana	mitochondrion	76.38	73.42
Zm00001d053684_P005	Maize	mitochondrion	74.89	72.73
Zm00001d015856_P007	Maize	mitochondrion	74.47	71.72
HORVU6Hr1G033980.6	Barley	plastid	74.26	71.66
PGSC0003DMT400020128	Potato	plastid	22.77	20.82
PGSC0003DMT400044692	Potato	plastid	21.7	19.96

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	EntrezGene:102595372	MapMan:2.3.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub
InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004108	GO:GO:0006091	GO:GO:0006099	GO:GO:0006101	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143
UniProt:M1CTV7	PFAM:PF00285	EnsemblPlantsGene:PGSC0003DMG400028982	PGSC:PGSC0003DMG400028982	EnsemblPlants:PGSC0003DMT400074559	PRINTS:PR00143
ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256	TIGRFAMs:TIGR01793	UniParc:UPI000295BAF1
RefSeq:XP_015169767.1	SEG:seg	:	:	:	:

Description

Citrate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400028982]

Coordinates

chr1:-:66938299..66947643

Molecular Weight (calculated)

52560.5 Da

IEP (calculated)

7.400

GRAVY (calculated)

-0.229

Length

470 amino acids

Sequence
(BLAST)

001: MVFYRSVSLL SKLRSRAVQQ SNVSNSVRWL QVQTSSGLDL RSELQELIPE QQDRLKKIKS EYGKVQLGNI TVDMVLGGMR GMTGLLWETS LLDPDEGIRF
101: RGLSIPECQK VLPAAKPGGE PLPEGLLWLL LTGKVPSKEQ VNSLSQELQS RATIPDHVYK TIDALPVTAH PMTQFATGVM ALQVQSEFQK AYEKGIHKSK
201: YWEPTYEDSM NLIAQVPLVA AYVYRRMYKN GDTIPKDESL DYGANFAHML GFSSSEMHEL MRLYVTIHSD HEGGNVSAHT GHLVASALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGENIS KEQLKDYVWK TLNSGKVVPG FGHGVLRKTD PRYTCQREFA MKHLPEDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNYYGL TEARYYTVLF GVSRALGICS QLIWDRALGL PLERPKSVTM EWLENQCKKA

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.