Factsheet for TraesCS6B01G194700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

golgi: 25769308
mitochondrion: 26136264

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G167300.1	Wheat	mitochondrion	99.58	99.58
TraesCS6D01G155800.1	Wheat	mitochondrion	98.31	92.99
Os02t0194100-01	Rice	mitochondrion	92.8	92.8
KXG29695	Sorghum	mitochondrion	91.74	91.74
Zm00001d053685_P002	Maize	mitochondrion	91.1	91.1
HORVU6Hr1G033980.6	Barley	plastid	91.74	88.91
Os11t0538900-01	Rice	mitochondrion	92.58	88.46
Bra000351.1-P	Field mustard	cytosol	78.39	83.33
Zm00001d053684_P005	Maize	mitochondrion	85.38	83.26
VIT_13s0156g00180.t01	Wine grape	mitochondrion	81.78	81.78
CDX95601	Canola	mitochondrion	82.2	81.68
CDX83429	Canola	mitochondrion	81.78	81.26
CDY23428	Canola	mitochondrion	81.36	80.84
CDY30465	Canola	mitochondrion	81.36	80.84
Bra037657.1-P	Field mustard	mitochondrion	81.36	80.84
AT2G44350.2	Thale cress	mitochondrion	81.14	80.8
Zm00001d015856_P007	Maize	mitochondrion	82.84	80.12
Bra014513.1-P	Field mustard	mitochondrion	79.45	79.45
CDY42662	Canola	mitochondrion	79.45	79.45
CDX89047	Canola	mitochondrion	79.45	79.45
PGSC0003DMT400074559	Potato	mitochondrion	79.03	79.36
AT3G60100.2	Thale cress	mitochondrion	77.54	78.04
GSMUA_Achr4P19260_001	Banana	mitochondrion	79.45	76.69
Solyc01g073740.2.1	Tomato	plastid	76.06	75.74
KRH13859	Soybean	mitochondrion	71.4	71.4
KRH43565	Soybean	mitochondrion	71.19	71.19
TraesCS5B01G416700.1	Wheat	golgi	22.46	21.07

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase
InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004108	GO:GO:0006091	GO:GO:0006099	GO:GO:0006101	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143	PFAM:PF00285
PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256	TIGRFAMs:TIGR01793
EnsemblPlantsGene:TraesCS6B01G194700	EnsemblPlants:TraesCS6B01G194700.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:+:229523885..229530722

Molecular Weight (calculated)

52533.7 Da

IEP (calculated)

7.391

GRAVY (calculated)

-0.172

Length

472 amino acids

Sequence
(BLAST)

001: MAFFRGLAAV SRLRSRMGQD ATTLGGVRWL QMQSASDLDL RSQLQEMIPE QQDRLKKLKS EHGKVQLGNI TVDMVLGGMR GMTGMLWETS LLDPEEGIRF
101: RGLSIPECQK VLPAAVKDGE PLPEGLLWLL LTGKVPTKEQ VDALSKELLS RSTVPGYVYK AIDALPVTAH PMTQFTTGVM ALQVESEFQK AYDKGMPKTK
201: FWEPTYEDCL NLIARLPQVA SYVYRRIFKD GKAIAADNTL DYAANFSHML GFDDPKMLEL MRLYITIHTD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VMEETGSNIT TDQLKEYVWK TLKSGKVVPG YGHGVLRNTD PRYSCQREFA LKYLPEDPLF QLVSKLYEVV PPILTELGKV
401: KNPWPNVDAH SGVLLNHFGL TEARYYTVLF GVSRSIGIGS QLIWDRALGL PLERPKSVTM EWLENHCKKA AA

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.