Factsheet for Solyc01g073740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074559	Potato	mitochondrion	94.09	94.89
VIT_13s0156g00180.t01	Wine grape	mitochondrion	83.12	83.47
Bra000351.1-P	Field mustard	cytosol	78.06	83.33
CDY23428	Canola	mitochondrion	83.12	82.95
Bra037657.1-P	Field mustard	mitochondrion	82.7	82.53
CDY30465	Canola	mitochondrion	82.7	82.53
CDX95601	Canola	mitochondrion	82.49	82.32
AT2G44350.2	Thale cress	mitochondrion	82.28	82.28
CDX83429	Canola	mitochondrion	82.07	81.89
AT3G60100.2	Thale cress	mitochondrion	80.38	81.24
Bra014513.1-P	Field mustard	mitochondrion	80.59	80.93
CDX89047	Canola	mitochondrion	80.59	80.93
CDY42662	Canola	mitochondrion	80.17	80.51
Os02t0194100-01	Rice	mitochondrion	77.0	77.33
KXG29695	Sorghum	mitochondrion	77.0	77.33
Zm00001d053685_P002	Maize	mitochondrion	76.16	76.48
TraesCS6B01G194700.1	Wheat	mitochondrion	75.74	76.06
TraesCS6A01G167300.1	Wheat	mitochondrion	75.53	75.85
Os11t0538900-01	Rice	mitochondrion	77.0	73.89
TraesCS6D01G155800.1	Wheat	mitochondrion	75.74	71.94
KRH43565	Soybean	mitochondrion	71.52	71.82
KRH13859	Soybean	mitochondrion	71.31	71.61
GSMUA_Achr4P19260_001	Banana	mitochondrion	72.78	70.55
Zm00001d053684_P005	Maize	mitochondrion	71.52	70.04
Zm00001d015856_P007	Maize	mitochondrion	71.52	69.47
HORVU6Hr1G033980.6	Barley	plastid	71.1	69.2
Solyc12g011000.1.1	Tomato	nucleus	21.73	20.04
Solyc07g055840.2.1	Tomato	nucleus, unclear	21.52	19.96

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase
InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004108	GO:GO:0006091	GO:GO:0006099	GO:GO:0006101	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143	UniProt:K4AXC0
PFAM:PF00285	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256
EnsemblPlantsGene:Solyc01g073740.2	EnsemblPlants:Solyc01g073740.2.1	TIGRFAMs:TIGR01793	UniParc:UPI000276174D	SEG:seg	:

Description

Citrate synthase [Source:UniProtKB/TrEMBL;Acc:K4AXC0]

Coordinates

chr1:+:81107161..81115946

Molecular Weight (calculated)

53052.2 Da

IEP (calculated)

8.406

GRAVY (calculated)

-0.171

Length

474 amino acids

Sequence
(BLAST)

001: MVFYRSVSLL SKLRSRAVQQ SNVSNSVRWL QVQTSSGLDL RSELQELIPE QQDRLKKIKS EYGKVQLGNI TVDMVLGGMR GMTGLLWETS LLDPDEGIRF
101: RGLSIPECQK VLPAAKPGGE PLPEGLLWLL LTGKVSAIKR ASEFIVSGIA ESGYYPWYVN HVYKTIDALP VTAHPMTQFA TGVMALQVQS EFQKAYEKGI
201: HKSKFWEPTY EDSMNLIAQV PLVAAYVYRR MYKNGDTIPK DESLDYGANF AHMLGFSSSE MHELMRLYVT IHSDHEGGNV SAHTGHLVAS ALSDPYLSFA
301: AALNGLAGPL HGLANQEVLL WIKSVVEECG ENISKEQLKD YVWKTLNSGK VVPGFGHGVL RKTDPRYTCQ REFAMKHLPK DPLFQLVSKL YEVVPPVLTE
401: LGKVKNPWPN VDAHSGVLLN YYGLTEARYY TVLFGVSRAL GICSQLIWDR ALGLPLERPK SITMEWLEKQ CKKA

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.