Factsheet for HORVU6Hr1G033980.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G194700.1	Wheat	mitochondrion	88.91	91.74
TraesCS6A01G167300.1	Wheat	mitochondrion	88.71	91.53
Os02t0194100-01	Rice	mitochondrion	83.37	86.02
TraesCS6D01G155800.1	Wheat	mitochondrion	87.89	85.77
KXG29695	Sorghum	mitochondrion	82.55	85.17
Zm00001d053685_P002	Maize	mitochondrion	82.14	84.75
Os11t0538900-01	Rice	mitochondrion	82.96	81.78
Bra000351.1-P	Field mustard	cytosol	72.9	79.95
Zm00001d053684_P005	Maize	mitochondrion	76.39	76.86
CDX95601	Canola	mitochondrion	74.74	76.63
CDX83429	Canola	mitochondrion	74.54	76.42
CDY23428	Canola	mitochondrion	74.13	76.0
CDY30465	Canola	mitochondrion	74.13	76.0
Bra037657.1-P	Field mustard	mitochondrion	74.13	76.0
CDY42662	Canola	mitochondrion	73.51	75.85
CDX89047	Canola	mitochondrion	73.51	75.85
VIT_13s0156g00180.t01	Wine grape	mitochondrion	73.51	75.85
Bra014513.1-P	Field mustard	mitochondrion	73.51	75.85
AT2G44350.2	Thale cress	mitochondrion	73.72	75.74
PGSC0003DMT400074559	Potato	mitochondrion	71.66	74.26
AT3G60100.2	Thale cress	mitochondrion	71.25	73.99
Zm00001d015856_P007	Maize	mitochondrion	73.92	73.77
GSMUA_Achr4P19260_001	Banana	mitochondrion	73.1	72.8
Solyc01g073740.2.1	Tomato	plastid	69.2	71.1
KRH13859	Soybean	mitochondrion	65.09	67.16
KRH43565	Soybean	mitochondrion	64.89	66.95
HORVU5Hr1G099910.1	Barley	cytosol	2.67	24.07
HORVU5Hr1G099820.5	Barley	plastid	20.33	19.34
HORVU0Hr1G030280.2	Barley	cytosol	6.57	17.78

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	UniProt:A0A287TVX4	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub
InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004108	GO:GO:0006091	GO:GO:0006099	GO:GO:0006101	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:HORVU6Hr1G033980	EnsemblPlants:HORVU6Hr1G033980.6	InterPro:IPR016142
InterPro:IPR016143	PFAM:PF00285	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8
SUPFAM:SSF48256	TIGRFAMs:TIGR01793	UniParc:UPI000B4776F2	SEG:seg	:	:

Description

Citrate synthase [Source:UniProtKB/TrEMBL;Acc:A0A287TVX4]

Coordinates

chrchr6H:+:156951621..156958044

Molecular Weight (calculated)

53526.6 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.145

Length

487 amino acids

Sequence
(BLAST)

001: PAPLPAFAAS SPDPFGPPTF PFPTPVLAAC SGHGVLPGPG RGLETAIPYE GQDATTLGGV RWLQMQSASD LDLRSQLQEM IPEQQQDRLK KLKSEHGKVQ
101: LGNITVDMVL GGMRGMTGML WETSLLDPEE GIRFRGLSIP ECQKVLPAAV KDGEPLPEGL LWLLLTGKVP TKEQVDALSK ELLSRSTVRG YVYKAIDALP
201: VTAHPMTQFT TGVMALQVDS EFQKAYDKGM PKTKFWEPTY EDCLNLIARL PQVASYVYRR IFKDGKAIAA DNTLDYAANF SHMLGFDDPK MLELMRLYIT
301: IHTDHEGGNV SAHTGHLVGS ALSDPYLSFA AALNGLAGPL HGLANQEVLL WIKSVMEETG SNITTDQLKE YVWKTLKSGK VVPGYGHGVL RNTDPRYSCQ
401: REFALKYLPE DPLFQLVSKL YEVVPPILTE LGKVKNPWPN VDAHSGVLLN HFGLTEARYY TVLFGVSRSI GIGSQLIWDR ALGLPLE

Best Arabidopsis Sequence Match ( AT2G44350.3 )
(BLAST)

001: MVFFRSVSAF TRLRSRVQGQ QSSLSNSVRW IQMQSSTDLD LKSQLQELIP EQQDRLKKLK SEHGKVQLGN ITVDMVIGGM RGMTGLLWET SLLDPEEGIR
101: FRGLSIPECQ KVLPTAQSGA EPLPEGLLWL LLTGKVPSKE QVEALSKDLA NRAAVPDYVY NAIDALPSTA HPMTQFASGV MALQVQSEFQ KAYENGIHKS
201: KFWEPTYEDC LNLIARVPVV AAYVYRRMYK NGDSIPSDKS LDYGANFSHM LGFDDEKVKE LMRLYITIHS DHEGGNVSAH TGHLVGSALS DPYLSFAAAL
301: NGLAGPLHGL ANQEVLLWIK SVVEECGEDI SKEQLKEYVW KTLNSGKVIP GYGHGVLRNT DPRYVCQREF ALKHLPDDPL FQLVSKLYEV VPPVLTELGK
401: VKNPWPNVDA HSGVLLNHYG LTEARYYTVL FGVSRSLGIC SQLIWDRALG LALERPKSVT MDWLEAHCKK ASSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.