Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00587 | Canola | cytosol | 76.46 | 78.09 |
| CDY49249 | Canola | cytosol | 76.46 | 78.09 |
| Bra014554.1-P | Field mustard | cytosol | 75.83 | 77.45 |
| Bra007416.1-P | Field mustard | cytosol | 72.08 | 77.06 |
| AT3G58750.1 | Thale cress | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole | 80.83 | 75.49 |
| CDX71926 | Canola | cytosol | 72.08 | 72.23 |
| AT2G42790.1 | Thale cress | cytosol | 76.46 | 72.1 |
| VIT_12s0142g00610.t01 | Wine grape | plastid | 73.54 | 68.95 |
| Os02t0232400-01 | Rice | nucleus, plastid | 71.04 | 68.2 |
| PGSC0003DMT400020128 | Potato | plastid | 72.92 | 68.09 |
| Solyc12g011000.1.1 | Tomato | nucleus | 72.71 | 67.9 |
| Zm00001d016248_P001 | Maize | mitochondrion | 70.83 | 67.59 |
| TraesCS5D01G422000.1 | Wheat | unclear | 70.83 | 67.59 |
| TraesCS5B01G416700.1 | Wheat | golgi | 70.62 | 67.4 |
| EES04804 | Sorghum | mitochondrion | 70.83 | 67.33 |
| TraesCS5A01G413300.1 | Wheat | mitochondrion | 70.0 | 66.8 |
| Solyc07g055840.2.1 | Tomato | nucleus, unclear | 70.83 | 66.54 |
| PGSC0003DMT400044692 | Potato | plastid | 70.62 | 66.34 |
| KRH14452 | Soybean | nucleus | 69.79 | 65.56 |
| GSMUA_Achr10P... | Banana | mitochondrion | 65.0 | 65.55 |
| HORVU5Hr1G099820.5 | Barley | plastid | 69.17 | 64.84 |
| KRH73702 | Soybean | cytosol, plastid | 68.96 | 64.65 |
| KRH46090 | Soybean | endoplasmic reticulum, nucleus | 68.54 | 64.13 |
| KRG98876 | Soybean | nucleus, plastid | 67.5 | 63.03 |
| CDX89002 | Canola | endoplasmic reticulum, golgi | 36.88 | 62.54 |
| CDY49250 | Canola | extracellular | 9.38 | 55.56 |
| HORVU0Hr1G030280.2 | Barley | cytosol | 18.54 | 49.44 |
| VIT_06s0080g00770.t01 | Wine grape | cytosol | 20.83 | 47.17 |
| CDX71928 | Canola | cytosol | 75.0 | 43.53 |
| AT3G60100.2 | Thale cress | mitochondrion | 20.0 | 20.47 |
| AT2G44350.2 | Thale cress | mitochondrion | 20.21 | 20.46 |
| AT2G11270.1 | Thale cress | mitochondrion | 2.71 | 15.66 |
Protein Annotations
| Gene3D:1.10.230.10 | Gene3D:1.10.580.10 | MapMan:5.7.3.6.1 | EntrezGene:825043 | ProteinID:AEE79825.1 | ArrayExpress:AT3G58740 |
| EnsemblPlantsGene:AT3G58740 | RefSeq:AT3G58740 | TAIR:AT3G58740 | RefSeq:AT3G58740-TAIR-G | EnsemblPlants:AT3G58740.1 | TAIR:AT3G58740.1 |
| EMBL:AY099611 | EMBL:BT002169 | ProteinID:CAB88291.1 | Symbol:CSY1 | InterPro:Citrate_synth-like_lrg_a-sub | InterPro:Citrate_synth-like_sm_a-sub |
| InterPro:Citrate_synthase | InterPro:Citrate_synthase_AS | InterPro:Citrate_synthase_bac-typ | InterPro:Citrate_synthase_sf | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005777 | GO:GO:0006091 |
| GO:GO:0006099 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0046912 |
| InterPro:IPR016142 | InterPro:IPR016143 | RefSeq:NP_191433.1 | PFAM:PF00285 | PIRSF:PIRSF001369 | PO:PO:0001170 |
| PO:PO:0009001 | PRINTS:PR00143 | ScanProsite:PS00480 | PANTHER:PTHR11739 | PANTHER:PTHR11739:SF4 | UniProt:Q9LXS7 |
| SUPFAM:SSF48256 | UniParc:UPI0000048895 | : | : | : | : |
Description
CSY1Citrate synthase 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS7]
Coordinates
chr3:-:21720773..21723790
Molecular Weight (calculated)
52898.3 Da
IEP (calculated)
8.160
GRAVY (calculated)
-0.261
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISERARAR LAVLNAHLTV SEPNQVLPAI EPWCTSAHIT AAPHGSLKGN LKIVDERTGN EYQVPVSEHG TVKTVDLKKI TTGKDDKGLN LYDPGYLNTA
101: PVRSSISYID GDEGILRYRG YPVEELAEKS TYTEVTYLLI YGNLPSQRQL ADWEFAISQN SAVPQGVLDM IQSMPNDVHP VGALVTAMSA LSIFYPDANP
201: SLMGLGVYKS KQVRDKQIVR VLGQAPTIAA AAYLRKAGKP PVQPLSNLSY SENFLYMVES MGDRSYKPNP RLARVLDILF ILQAEHEMNC STAAARHLSS
301: SGGDVYTAVS GGVGAIYGPL HGGAVEATIN MLSEIGTVEN IPEFIESVKN KKRRLSGFGH RIYKNYDPRG KVVKKLADEV FSILGRDPLV EVGDALEKAA
401: LSDEYFVKRK LYPNVDFYSG LINRAMGIPS SFTAVSRIAG YLSHWRESLD DPDTKIMRPQ QVYTGAGIRH YETVRERTKL
101: PVRSSISYID GDEGILRYRG YPVEELAEKS TYTEVTYLLI YGNLPSQRQL ADWEFAISQN SAVPQGVLDM IQSMPNDVHP VGALVTAMSA LSIFYPDANP
201: SLMGLGVYKS KQVRDKQIVR VLGQAPTIAA AAYLRKAGKP PVQPLSNLSY SENFLYMVES MGDRSYKPNP RLARVLDILF ILQAEHEMNC STAAARHLSS
301: SGGDVYTAVS GGVGAIYGPL HGGAVEATIN MLSEIGTVEN IPEFIESVKN KKRRLSGFGH RIYKNYDPRG KVVKKLADEV FSILGRDPLV EVGDALEKAA
401: LSDEYFVKRK LYPNVDFYSG LINRAMGIPS SFTAVSRIAG YLSHWRESLD DPDTKIMRPQ QVYTGAGIRH YETVRERTKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.