CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79848
CDX79851
CDY15651
CDY50821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58740.1	CDX79848	AT2G42790.1	21798944
AT3G58740.1	CDX79851	AT2G42790.1	21798944
AT3G58740.1	CDY15651	AT2G42790.1	21798944
AT3G58740.1	CDY50821	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49249	Canola	cytosol	82.55	82.55
AT3G58740.1	Thale cress	cytosol	78.09	76.46
CDX71926	Canola	cytosol	77.45	75.99
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.7	75.15
CDY49252	Canola	cytosol	80.85	74.95
CDX98329	Canola	cytosol, peroxisome, plastid	80.85	74.95
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	80.85	74.8
CDX89002	Canola	endoplasmic reticulum, golgi	44.04	73.14
CDX79851	Canola	cytosol	77.02	70.98
CDY50821	Canola	cytosol	76.81	70.78
Solyc12g011000.1.1	Tomato	nucleus	75.32	68.87
CDX79848	Canola	cytosol	32.34	68.78
VIT_12s0142g00610.t01	Wine grape	plastid	74.68	68.55
PGSC0003DMT400020128	Potato	plastid	74.89	68.48
Os02t0232400-01	Rice	nucleus, plastid	72.13	67.8
Solyc07g055840.2.1	Tomato	nucleus, unclear	72.55	66.73
TraesCS5B01G416700.1	Wheat	golgi	71.28	66.6
TraesCS5D01G422000.1	Wheat	unclear	71.06	66.4
TraesCS5A01G413300.1	Wheat	mitochondrion	71.06	66.4
Zm00001d016248_P001	Maize	mitochondrion	70.85	66.2
PGSC0003DMT400044692	Potato	plastid	71.91	66.14
EES04804	Sorghum	mitochondrion	70.85	65.94
CDY15651	Canola	nucleus	24.89	65.73
KRH14452	Soybean	nucleus	70.85	65.17
GSMUA_Achr10P...	Banana	mitochondrion	65.96	65.13
HORVU5Hr1G099820.5	Barley	plastid	70.43	64.65
KRH73702	Soybean	cytosol, plastid	70.0	64.26
KRH46090	Soybean	endoplasmic reticulum, nucleus	69.79	63.94
KRG98876	Soybean	nucleus, plastid	68.94	63.03
CDY49250	Canola	extracellular	9.15	53.09
HORVU0Hr1G030280.2	Barley	cytosol	20.0	52.22
CDX71928	Canola	cytosol	81.06	46.07
VIT_06s0080g00770.t01	Wine grape	cytosol	20.21	44.81
CDY42662	Canola	mitochondrion	22.13	22.03
CDX89047	Canola	mitochondrion	22.13	22.03
CDX83429	Canola	mitochondrion	22.13	21.89
CDX95601	Canola	mitochondrion	22.13	21.89
CDY30465	Canola	mitochondrion	21.91	21.68
CDY23428	Canola	mitochondrion	21.91	21.68
CDY58554	Canola	cytosol	5.74	21.6
CDY69998	Canola	plastid	5.96	16.97
CDX71183	Canola	mitochondrion	10.21	16.16
CDX77720	Canola	cytosol	6.38	14.78

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	GO:A0A078EHJ7	EnsemblPlants:CDY00587	ProteinID:CDY00587
ProteinID:CDY00587.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ
InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00110349001	InterPro:IPR016142
InterPro:IPR016143	PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739
PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniPathway:UPA00223	UniParc:UPI0004EDE2D0	SEG:seg	:

Description

BnaC04g23380D

Coordinates

chrLK031920:-:476433..485396

Molecular Weight (calculated)

51897.3 Da

IEP (calculated)

7.425

GRAVY (calculated)

-0.182

Length

470 amino acids

Sequence
(BLAST)

001: MERGIARLAV LSAHLEVSDQ VLPPPIEPWC TSGASAPHGS LKGSLTIVDE RTGKKYQVPV AEDGTVKSID LKKITTGADD KGLKLYDPGY LNTAPVRSSI
101: SYTDGDEGIL RYRGYPIEEL AESSTFLEVA YLLIYGNLPS QRQLADWELA ISQHSAVPQG LLDMIQSMPQ DAYPTGAFVS AMSALSLFHP DANPAHMGQD
201: VYKSAQVRDK QIFRILGQAS TIAAAAFLRT AGKPHVLPLS NLSYTENLLY MLNSMGNRFY KPNPRLARVM DTIFILHCEH EMNCSTAAAR HLSSSGVDVY
301: TAIGGATGAI NGPLHGGAVE AVPKMLSEIG SVENIPEFIE CVKNKKRKLS GFGHRVYRNY DPRAKVLKKL ADEVFSIFGK DPLFEVAAAL EKTALTDEYF
401: VKRKLYPNVD FYSGLVCRVM GVPSHFIIVS RIAGYLSHWR ESLDDPDTKI MRPQQAYNGV WLRHYEPVRE

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.