CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, golgi, plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY53122
CDY58595

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58750.1	CDY53122	AT1G25420.1	21798944
AT3G58750.1	CDY58595	AT1G25420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49252	Canola	cytosol	98.04	98.82
Bra007417.1-P	Field mustard	cytosol	97.85	98.62
CDX98329	Canola	cytosol, peroxisome, plastid	95.89	96.65
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	95.89	96.46
AT3G58750.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	93.15	92.61
CDX79848	Canola	cytosol	39.33	90.95
CDY15651	Canola	nucleus	30.92	88.76
CDX79851	Canola	cytosol	87.48	87.65
CDY50821	Canola	cytosol	86.89	87.06
CDY49249	Canola	cytosol	76.91	83.62
Solyc12g011000.1.1	Tomato	nucleus	82.19	81.71
CDY00587	Canola	cytosol	75.15	81.7
VIT_12s0142g00610.t01	Wine grape	plastid	81.6	81.45
PGSC0003DMT400020128	Potato	plastid	81.8	81.32
Solyc07g055840.2.1	Tomato	nucleus, unclear	80.63	80.63
PGSC0003DMT400044692	Potato	plastid	80.04	80.04
Os02t0232400-01	Rice	nucleus, plastid	78.08	79.8
TraesCS5B01G416700.1	Wheat	golgi	77.69	78.93
TraesCS5D01G422000.1	Wheat	unclear	77.5	78.73
TraesCS5A01G413300.1	Wheat	mitochondrion	77.5	78.73
EES04804	Sorghum	mitochondrion	77.69	78.61
Zm00001d016248_P001	Maize	mitochondrion	77.3	78.53
GSMUA_Achr10P...	Banana	mitochondrion	72.8	78.15
KRH14452	Soybean	nucleus	77.89	77.89
KRH73702	Soybean	cytosol, plastid	76.71	76.56
HORVU5Hr1G099820.5	Barley	plastid	76.71	76.56
CDX71926	Canola	cytosol	70.84	75.57
KRH46090	Soybean	endoplasmic reticulum, nucleus	74.95	74.66
KRG98876	Soybean	nucleus, plastid	74.76	74.32
CDX89002	Canola	endoplasmic reticulum, golgi	36.4	65.72
HORVU0Hr1G030280.2	Barley	cytosol	19.77	56.11
CDY49250	Canola	extracellular	8.81	55.56
VIT_06s0080g00770.t01	Wine grape	cytosol	21.33	51.42
CDX71928	Canola	cytosol	75.73	46.8
CDY42662	Canola	mitochondrion	21.92	23.73
CDX89047	Canola	mitochondrion	21.92	23.73
CDX83429	Canola	mitochondrion	21.92	23.58
CDX95601	Canola	mitochondrion	21.92	23.58
CDY30465	Canola	mitochondrion	21.72	23.37
CDY23428	Canola	mitochondrion	21.72	23.37
CDY58554	Canola	cytosol	5.68	23.2
CDY69998	Canola	plastid	6.26	19.39
CDX77720	Canola	cytosol	7.05	17.73
CDX71183	Canola	mitochondrion	10.18	17.51

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	GO:A0A078C4X8	EnsemblPlants:CDX71925	ProteinID:CDX71925
ProteinID:CDX71925.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ
InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00155676001	InterPro:IPR016142
InterPro:IPR016143	PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739
PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniPathway:UPA00223	UniParc:UPI0004EEFDBB	:	:

Description

BnaC08g29490D

Coordinates

chrLK031795:+:1331482..1334686

Molecular Weight (calculated)

56216.6 Da

IEP (calculated)

8.932

GRAVY (calculated)

-0.172

Length

511 amino acids

Sequence
(BLAST)

001: MEISERVKAR LAVLTAHLAV SDPVGSSQVL PPGAIEPWCT SSAVTPHGSL KGSLTIVDER TGKKYQVPVS EDGTVKSVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIS YIDGDEGILR YRGYPIEELA ESSTFIEVSY LLMYGNLPSQ SQLADWEFTI SQHSAVPQGV LEIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRMA GRPPVLPSGN FSYAENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT AVAGAVGALY GPLHGGANEA VLKMLAEIGS VENIPEFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TKIMRPQQAY TGVWLRHYEP VRQRTLSSDS DKMGQVSISN
501: ASRRRLSGSA L

Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)

001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL

Arabidopsis Description

CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,golgi,plasma membrane,vacuole,endoplasmic reticulum,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.