CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67764
CDX71925
CDX72100
CDX73237
CDX87634
CDX94450
CDX97722
CDX98329
CDY06600
CDY17309
CDY19907
CDY20779
CDY21074
CDY27182
CDY30135
CDY32125
CDY34600
CDY49252
CDY61809

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	CDY21074	AT1G12920.1	21798944
AT2G42790.1	CDY34600	AT1G12920.1	21798944
AT2G42790.1	CDX73237	AT1G76150.1	21798944
AT2G42790.1	CDX87634	AT1G76150.1	21798944
AT2G42790.1	CDX94450	AT2G35500.1	21798944
AT2G42790.1	CDY32125	AT2G35500.1	21798944
AT2G42790.1	CDY61809	AT2G35500.1	21798944
AT2G42790.1	CDX97722	AT3G16120.1	21798944
AT2G42790.1	CDY30135	AT3G16120.1	21798944
AT2G42790.1	CDX72100	AT3G56900.1	21798944
AT2G42790.1	CDY27182	AT3G56900.1	21798944
AT2G42790.1	CDX67764	AT3G58750.1	21798944
AT2G42790.1	CDX71925	AT3G58750.1	21798944
AT2G42790.1	CDX98329	AT3G58750.1	21798944
AT2G42790.1	CDY49252	AT3G58750.1	21798944
AT2G42790.1	CDY06600	AT5G55190.1	21798944
AT2G42790.1	CDY17309	AT5G55190.1	21798944
AT2G42790.1	CDY19907	AT5G55190.1	21798944
AT2G42790.1	CDY20779	AT5G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79848	Canola	cytosol	42.94	99.09
CDY15651	Canola	nucleus	34.51	98.88
CDX79851	Canola	cytosol	98.24	98.24
AT2G42790.1	Thale cress	cytosol	91.37	91.55
CDY49252	Canola	cytosol	86.86	87.38
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.06	86.89
CDX98329	Canola	cytosol, peroxisome, plastid	86.27	86.78
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	86.08	86.42
PGSC0003DMT400020128	Potato	plastid	82.35	81.71
VIT_12s0142g00610.t01	Wine grape	plastid	81.96	81.64
Solyc07g055840.2.1	Tomato	nucleus, unclear	81.76	81.6
Solyc12g011000.1.1	Tomato	nucleus	81.96	81.32
Os02t0232400-01	Rice	nucleus, plastid	79.02	80.6
PGSC0003DMT400044692	Potato	plastid	80.59	80.43
CDY49249	Canola	cytosol	73.73	80.0
TraesCS5D01G422000.1	Wheat	unclear	78.43	79.52
TraesCS5B01G416700.1	Wheat	golgi	78.43	79.52
GSMUA_Achr10P...	Banana	mitochondrion	73.92	79.2
TraesCS5A01G413300.1	Wheat	mitochondrion	78.04	79.13
KRH14452	Soybean	nucleus	79.02	78.86
Zm00001d016248_P001	Maize	mitochondrion	77.45	78.53
EES04804	Sorghum	mitochondrion	77.65	78.42
CDY00587	Canola	cytosol	70.78	76.81
KRH73702	Soybean	cytosol, plastid	77.06	76.76
HORVU5Hr1G099820.5	Barley	plastid	77.06	76.76
KRH46090	Soybean	endoplasmic reticulum, nucleus	75.69	75.24
KRG98876	Soybean	nucleus, plastid	74.9	74.32
CDX71926	Canola	cytosol	68.04	72.44
CDX89002	Canola	endoplasmic reticulum, golgi	36.08	65.02
HORVU0Hr1G030280.2	Barley	cytosol	19.8	56.11
CDY49250	Canola	extracellular	8.63	54.32
VIT_06s0080g00770.t01	Wine grape	cytosol	21.96	52.83
CDX71928	Canola	cytosol	72.16	44.5
CDY42662	Canola	mitochondrion	22.75	24.58
CDX83429	Canola	mitochondrion	22.75	24.42
CDX95601	Canola	mitochondrion	22.75	24.42
CDY30465	Canola	mitochondrion	22.55	24.21
CDY23428	Canola	mitochondrion	22.55	24.21
CDX89047	Canola	mitochondrion	22.35	24.15
CDY58554	Canola	cytosol	5.69	23.2
CDY69998	Canola	plastid	6.27	19.39
CDX77720	Canola	cytosol	7.06	17.73
CDX71183	Canola	mitochondrion	9.8	16.84

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	GO:A0A078ILE6	UniProt:A0A078ILE6	EnsemblPlants:CDY50821
ProteinID:CDY50821	ProteinID:CDY50821.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS
InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00097545001
InterPro:IPR016142	InterPro:IPR016143	PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480
PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniPathway:UPA00223	UniParc:UPI0004EE7ECB	:

Description

BnaC04g52580DCitrate synthase [Source:UniProtKB/TrEMBL;Acc:A0A078ILE6]

Coordinates

chrLK032942:-:38862..42003

Molecular Weight (calculated)

56263.4 Da

IEP (calculated)

7.456

GRAVY (calculated)

-0.235

Length

510 amino acids

Sequence
(BLAST)

001: MEEISERVRA RLAVLSAHLS SANSLESGSP AIERWTTSAD INPPPLGSLK GALTVVDERT GKKYQVPVSD DGTVKAVDLK KISMGKEDKG IKLYDPGYLN
101: TAPVRSSISY IDGDEGILRY RGYPIEEMAE NSTFLEVAYL LMYGNLPSES QLSDWEFAVS QHSAVPQGVL DIIQSMPHDA HPMGVLVSAM SALSIFHPDA
201: NPALRGQDIY DSKQVRDKQI IRIIGKAPTI AAAAYLRMAG RPPVLPSGSL SYAENFLYML DSMGDRSYKP NPRLARVLDI LFILHAEHEM NCSTAAARHL
301: ASSGVDVYTA VAGAVGALYG PLHGGANEAV LKMLSEIGSV DNIPEFIEGV KNRKRKMSGF GHRVYKNYDP RAKVIKKLAD EVFSIVGRDP LIEVAVALEK
401: AALSDDYFVK RKLYPNVDFY SGLIYRAMGF PPEFFTVLFA IPRMAGYLSH WKESLDDPDT KIMRPQQVYT GVWLRHYTPV RERDEPKESD KLSQVSTSNA
501: SRRRLAGSSA

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.