CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67764
CDX71925
CDX98329
CDY49252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	CDX67764	AT3G58750.1	21798944
AT1G12920.1	CDX71925	AT3G58750.1	21798944
AT1G12920.1	CDX98329	AT3G58750.1	21798944
AT1G12920.1	CDY49252	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016748.1-P	Field mustard	cytosol	100.0	100.0
CDY34600	Canola	cytosol	38.39	100.0
AT1G12920.1	Thale cress	cytosol	97.7	97.93
CDY56364	Canola	cytosol	94.25	94.25
CDY00188	Canola	cytosol	93.79	93.79
EER93602	Sorghum	cytosol	90.8	90.39
Zm00001d013481_P001	Maize	cytosol, extracellular	90.57	90.16
TraesCS2A01G192900.1	Wheat	cytosol	90.34	89.93
Zm00001d006725_P001	Maize	cytosol, extracellular	90.11	89.7
TraesCS2B01G213800.1	Wheat	cytosol	90.11	89.7
EER99630	Sorghum	cytosol	90.11	89.7
Os03t0702800-01	Rice	cytosol, plasma membrane	89.89	89.47
Os07t0587400-01	Rice	cytosol	89.43	89.02
TraesCS4D01G038300.1	Wheat	cytosol	88.28	87.87
TraesCS4B01G040900.1	Wheat	cytosol	88.28	87.87
TraesCS4A01G273100.1	Wheat	cytosol	88.28	87.87
HORVU4Hr1G006500.2	Barley	cytosol	88.74	87.33
CDY19410	Canola	cytosol	31.26	85.0
CDX85313	Canola	cytosol	84.6	84.79
CDX86338	Canola	cytosol	84.6	84.79
HORVU2Hr1G035400.1	Barley	cytosol	89.66	82.28
CDY35766	Canola	cytosol	71.03	73.92
CDX98026	Canola	cytosol	19.31	60.0
CDY14497	Canola	cytosol	23.45	58.62
CDY45916	Canola	cytosol	25.52	42.69

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:A0A078G6Q0	UniProt:A0A078G6Q0
EnsemblPlants:CDY21074	ProteinID:CDY21074	ProteinID:CDY21074.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00015246001	InterPro:IPR024049	InterPro:IPR029064
InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481
TIGRFAMs:TIGR03676	UniParc:UPI0001C00E98	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	:

Description

BnaA08g24510DBnaA08g24510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6Q0]

Coordinates

chrLK032115:-:557616..559423

Molecular Weight (calculated)

48919.0 Da

IEP (calculated)

5.074

GRAVY (calculated)

-0.446

Length

435 amino acids

Sequence
(BLAST)

001: MADQEADTNI EIWKIKKLIK GLESARGNGT SMISLIMPPR DQVSRVTKML GDEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPTNG LVLYTGTIVN
101: DDGKEKKVTF DFEPFRPINA SLYLCDNKFH TGALNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VAGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAIETL IVWENLDINR YELKNSTSGE IVVKHFGKDQ ETDQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GMLRYQLDMR TFDELSDGEV YEDSD

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.