Factsheet for Zm00001d013481_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016248_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	Zm00001d016248_P001	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93602	Sorghum	cytosol	99.31	99.31
Os03t0702800-01	Rice	cytosol, plasma membrane	97.71	97.71
Zm00001d006725_P001	Maize	cytosol, extracellular	95.42	95.42
TraesCS4D01G038300.1	Wheat	cytosol	94.51	94.51
TraesCS4B01G040900.1	Wheat	cytosol	94.51	94.51
TraesCS4A01G273100.1	Wheat	cytosol	94.28	94.28
HORVU4Hr1G006500.2	Barley	cytosol	94.51	93.44
CDY00188	Canola	cytosol	91.08	91.49
AT3G26618.1	Thale cress	cytosol	90.85	91.26
CDY56364	Canola	cytosol	90.62	91.03
Bra034244.1-P	Field mustard	cytosol	90.62	91.03
CDY21074	Canola	cytosol	90.16	90.57
Bra016748.1-P	Field mustard	cytosol	90.16	90.57
AT1G12920.1	Thale cress	cytosol	89.7	90.32
CDY34600	Canola	cytosol	33.64	88.02
CDY19410	Canola	cytosol	30.21	82.5
Zm00001d037868_P001	Maize	cytosol	78.95	78.77
Zm00001d021144_P001	Maize	cytosol	21.51	52.81

Protein Annotations

EntrezGene:100285172	MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	ProteinID:AQK63643.1
UniProt:B6U1I9	EMBL:BT069720	EMBL:EU971104	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064	InterPro:L30e-like
PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF13	InterPro:Peptide_chain-rel_eRF1/aRF1
InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676
UniParc:UPI000182EF14	EnsemblPlantsGene:Zm00001d013481	EnsemblPlants:Zm00001d013481_P001	EnsemblPlants:Zm00001d013481_T001	InterPro:eRF1_1_Pelota	InterPro:eRF1_2
InterPro:eRF1_3	:	:	:	:	:

Description

Eukaryotic peptide chain release factor subunit 1-2

Coordinates

chr5:-:12593717..12595030

Molecular Weight (calculated)

49047.2 Da

IEP (calculated)

5.279

GRAVY (calculated)

-0.439

Length

437 amino acids

Sequence
(BLAST)

001: MSDGQETDKN IEIWKIKKLI KALESARGNG TSMISLIMPP RDQISRVTKM LGDEYGTASN IKSRVNRQSV LAAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TEDGKEKKVT IDFEPFKPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVAGLILAGS ADFKTELSQS DMFDQRLQAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKKLIGK YFEEISQDTG
301: KYVFGVDDTL KALEMGAVET LIVWENLDVN RYVLKNTATG ETVIKHLNKE QEADQSHFRD PSTNAELEVQ EKTSLLEWFA NEYKKFGCTL EFVTNKSQEG
401: SQFCRGFGGI GGMLRYQLDI RSFDELSDDE GVYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.