Factsheet for HORVU4Hr1G006500.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G030280.2
HORVU5Hr1G099820.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	HORVU0Hr1G030280.2	AT3G58750.1	21798944
AT1G12920.1	HORVU5Hr1G099820.5	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G038300.1	Wheat	cytosol	97.51	98.63
TraesCS4B01G040900.1	Wheat	cytosol	97.51	98.63
TraesCS4A01G273100.1	Wheat	cytosol	97.29	98.4
Zm00001d013481_P001	Maize	cytosol, extracellular	93.44	94.51
Os03t0702800-01	Rice	cytosol, plasma membrane	93.21	94.28
EER93602	Sorghum	cytosol	93.21	94.28
AT3G26618.1	Thale cress	cytosol	87.78	89.2
CDY56364	Canola	cytosol	87.56	88.97
CDY00188	Canola	cytosol	87.56	88.97
Bra034244.1-P	Field mustard	cytosol	87.56	88.97
CDY21074	Canola	cytosol	87.33	88.74
Bra016748.1-P	Field mustard	cytosol	87.33	88.74
AT1G12920.1	Thale cress	cytosol	86.65	88.25
CDY34600	Canola	cytosol	32.58	86.23
HORVU3Hr1G104360.1	Barley	cytosol	84.39	85.55
HORVU2Hr1G035400.1	Barley	cytosol	91.18	85.02
CDY19410	Canola	cytosol	29.19	80.62
HORVU1Hr1G057880.1	Barley	cytosol	78.73	78.91
HORVU3Hr1G104200.2	Barley	cytosol	71.04	71.53
HORVU3Hr1G060530.4	Barley	cytosol	28.51	51.85
HORVU3Hr1G046830.1	Barley	mitochondrion	9.28	50.62

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	UniProt:A0A287N277	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:HORVU4Hr1G006500
EnsemblPlants:HORVU4Hr1G006500.2	InterPro:IPR024049	InterPro:IPR029064	InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464
PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194
SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676	UniParc:UPI000B46791E	InterPro:eRF1_1_Pelota
InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:15277573..15279046

Molecular Weight (calculated)

49726.0 Da

IEP (calculated)

5.395

GRAVY (calculated)

-0.437

Length

442 amino acids

Sequence
(BLAST)

001: MSDSHETDKN IEMWKIKKLI KGLESARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV
101: TDDGKEKKVT IDFEPFKPIN ASLYLCDNKF HTEALSELLE SDDKFGFIIM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINQATSQP NVAGLILAGS ADFKTELSQS DMFDQRLQTK ILNVVDVSYG GESGFNQAIE LSAEILANVK FIQEKKLIGK YFEEISQDTG
301: KYVFGVDDTL KALEMGAVET LMVWENLDVN RYVLKHSATG EIIIKHLNKE TETDQSNFRD PSTNAELEVQ EKTSLLEWFA NEYKKFGCTL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDI RSFDDLDDDE GVYEDSDYSH VL

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.