CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04804

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	EES04804	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013481_P001	Maize	cytosol, extracellular	99.31	99.31
Os03t0702800-01	Rice	cytosol, plasma membrane	97.48	97.48
EER99630	Sorghum	cytosol	94.97	94.97
GSMUA_Achr10P...	Banana	cytosol	61.33	94.37
KRH70101	Soybean	cytosol	94.28	94.28
TraesCS4B01G040900.1	Wheat	cytosol	94.28	94.28
TraesCS4D01G038300.1	Wheat	cytosol	94.28	94.28
TraesCS4A01G273100.1	Wheat	cytosol	94.05	94.05
GSMUA_Achr8P09860_001	Banana	cytosol	66.36	93.85
VIT_18s0041g00730.t01	Wine grape	cytosol	93.59	93.59
KRH08442	Soybean	cytosol, nucleus	93.36	93.58
Solyc12g010520.1.1	Tomato	nucleus	86.5	93.33
HORVU4Hr1G006500.2	Barley	cytosol	94.28	93.21
PGSC0003DMT400020395	Potato	cytosol	93.14	93.14
Solyc07g006130.1.1	Tomato	cytosol, nucleus	85.58	92.35
KRH09439	Soybean	cytosol	91.76	91.76
KRH06769	Soybean	mitochondrion	77.35	91.6
PGSC0003DMT400029003	Potato	cytosol	91.3	91.3
PGSC0003DMT400028999	Potato	cytosol	91.3	91.3
VIT_18s0072g01010.t01	Wine grape	cytosol	91.3	91.3
AT3G26618.1	Thale cress	cytosol	90.62	91.03
CDY00188	Canola	cytosol	90.62	91.03
Bra016748.1-P	Field mustard	cytosol	90.39	90.8
CDY21074	Canola	cytosol	90.39	90.8
Bra034244.1-P	Field mustard	cytosol	90.16	90.57
CDY56364	Canola	cytosol	90.16	90.57
AT1G12920.1	Thale cress	cytosol	89.93	90.55
KRH38906	Soybean	endoplasmic reticulum	93.36	90.47
CDY34600	Canola	cytosol	33.64	88.02
PGSC0003DMT400060405	Potato	cytosol	87.87	87.87
Solyc05g055210.1.1	Tomato	plastid	87.87	87.87
PGSC0003DMT400019675	Potato	cytosol	87.87	87.87
VIT_18s0001g12240.t01	Wine grape	mitochondrion	93.82	87.61
Solyc11g006660.1.1	Tomato	nucleus	87.41	87.41
KRG94758	Soybean	cytosol, endoplasmic reticulum	69.34	87.32
GSMUA_Achr6P09990_001	Banana	cytosol	16.25	84.52
CDY19410	Canola	cytosol	30.21	82.5
OQU77890	Sorghum	cytosol	80.32	76.97
GSMUA_Achr10P...	Banana	cytosol	15.56	76.4
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	86.04	68.49

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	EntrezGene:8062938	UniProt:C5WNT1
EnsemblPlants:EER93602	ProteinID:EER93602	ProteinID:EER93602.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016149	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064
InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	EnsemblPlantsGene:SORBI_3001G123500	SUPFAM:SSF53137	SUPFAM:SSF55315
SUPFAM:SSF55481	unigene:Sbi.12624	TIGRFAMs:TIGR03676	UniParc:UPI0001A828B5	RefSeq:XP_002466604.1	InterPro:eRF1_1_Pelota
InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:9727130..9730257

Molecular Weight (calculated)

49045.2 Da

IEP (calculated)

5.279

GRAVY (calculated)

-0.435

Length

437 amino acids

Sequence
(BLAST)

001: MSDGQETDKN IEIWKIKKLI KALEAARGNG TSMISLIMPP RDQISRVTKM LGDEYGTASN IKSRVNRQSV LAAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TEDGKEKKVT IDFEPFRPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVAGLILAGS ADFKTELSQS DMFDQRLQAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKKLIGK YFEEISQDTG
301: KYVFGVDDTL KALEMGAVET LIVWENLDVN RYVLKNSATG ETVIKHLNKE QEADQSHFRD PSTNAELEVQ EKTSLLEWFA NEYKKFGCTL EFVTNKSQEG
401: SQFCRGFGGI GGMLRYQLDI RSFDELSDDE GVYEDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.