Factsheet for VIT_18s0041g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00770.t01
VIT_12s0142g00610.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	VIT_06s0080g00770.t01	AT3G58750.1	21798944
AT1G12920.1	VIT_12s0142g00610.t01	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0072g01010.t01	Wine grape	cytosol	94.74	94.74
EER93602	Sorghum	cytosol	93.59	93.59
KRH09439	Soybean	cytosol	93.36	93.36
Os03t0702800-01	Rice	cytosol, plasma membrane	92.45	92.45
Solyc12g010520.1.1	Tomato	nucleus	85.35	92.1
Solyc07g006130.1.1	Tomato	cytosol, nucleus	85.13	91.85
PGSC0003DMT400028999	Potato	cytosol	91.76	91.76
PGSC0003DMT400029003	Potato	cytosol	91.76	91.76
PGSC0003DMT400020395	Potato	cytosol	91.76	91.76
Os07t0587400-01	Rice	cytosol	91.76	91.76
AT3G26618.1	Thale cress	cytosol	91.3	91.72
EER99630	Sorghum	cytosol	91.3	91.3
TraesCS2A01G192900.1	Wheat	cytosol	91.08	91.08
KRH38906	Soybean	endoplasmic reticulum	93.82	90.91
TraesCS2B01G213800.1	Wheat	cytosol	90.85	90.85
VIT_18s0001g12240.t01	Wine grape	mitochondrion	96.8	90.38
AT1G12920.1	Thale cress	cytosol	89.7	90.32
TraesCS4A01G273100.1	Wheat	cytosol	89.7	89.7
TraesCS4B01G040900.1	Wheat	cytosol	89.7	89.7
TraesCS4D01G038300.1	Wheat	cytosol	89.7	89.7
CDY14497	Canola	cytosol	24.94	62.64
HORVU3Hr1G046830.1	Barley	mitochondrion	9.84	53.09

Protein Annotations

EntrezGene:100242471	wikigene:100242471	MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10
EMBL:AM457683	ProteinID:CAN63440	ProteinID:CAN63440.1	ProteinID:CCB61708	ProteinID:CCB61708.1	UniProt:F6I3Y5
EMBL:FN596744	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064	InterPro:L30e-like	EntrezGene:LOC100242471	wikigene:LOC100242471
PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1
InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676
UniParc:UPI00015CD122	ArrayExpress:VIT_18s0041g00730	EnsemblPlantsGene:VIT_18s0041g00730	EnsemblPlants:VIT_18s0041g00730.t01	unigene:Vvi.915	RefSeq:XP_002271656
RefSeq:XP_002271656.1	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:25257047..25260217

Molecular Weight (calculated)

49142.4 Da

IEP (calculated)

5.567

GRAVY (calculated)

-0.424

Length

437 amino acids

Sequence
(BLAST)

001: MADGHETDKN IEIWKIKKLI KALEAARGNG TSMISLIMPP RDQISRVTKM LGDEFGTASN IKSRVNRQSV LGAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TEDGKEKKVT IDFEPFRPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLQAK ILNVVDVSYG GENGFNQAIE LSSEILSNVK FIQEKRLIGK YFEEISQDTG
301: KYVFGVDDTL KALEMGAVET LIVWENLDIS RYVLKNNITG EIVIKHLNKE QESNQSHFRD TATSAELEVQ EKMSLLEWFA NEYKRFGCTL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDM RSFDEVSDDG ENYDDSD

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.