Factsheet for PGSC0003DMT400028999

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400020128
PGSC0003DMT400044692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	PGSC0003DMT400020128	AT3G58750.1	21798944
AT1G12920.1	PGSC0003DMT400044692	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029003	Potato	cytosol	100.0	100.0
Solyc07g006130.1.1	Tomato	cytosol, nucleus	92.22	99.51
PGSC0003DMT400020395	Potato	cytosol	94.05	94.05
VIT_18s0041g00730.t01	Wine grape	cytosol	91.76	91.76
KRH09439	Soybean	cytosol	91.53	91.53
Os03t0702800-01	Rice	cytosol, plasma membrane	91.53	91.53
EER93602	Sorghum	cytosol	91.3	91.3
Os07t0587400-01	Rice	cytosol	90.62	90.62
EER99630	Sorghum	cytosol	90.39	90.39
VIT_18s0072g01010.t01	Wine grape	cytosol	89.93	89.93
AT3G26618.1	Thale cress	cytosol	89.47	89.89
TraesCS2A01G192900.1	Wheat	cytosol	89.7	89.7
TraesCS2B01G213800.1	Wheat	cytosol	89.7	89.7
TraesCS4B01G040900.1	Wheat	cytosol	89.24	89.24
TraesCS4D01G038300.1	Wheat	cytosol	89.24	89.24
AT1G12920.1	Thale cress	cytosol	88.56	89.17
KRH38906	Soybean	endoplasmic reticulum	91.99	89.14
TraesCS4A01G273100.1	Wheat	cytosol	89.02	89.02
PGSC0003DMT400019675	Potato	cytosol	86.04	86.04
PGSC0003DMT400060405	Potato	cytosol	86.04	86.04
VIT_18s0001g12240.t01	Wine grape	mitochondrion	91.08	85.04
CDY14497	Canola	cytosol	24.03	60.34
HORVU3Hr1G046830.1	Barley	mitochondrion	9.61	51.85

Protein Annotations

EntrezGene:102594296	MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049
InterPro:IPR029064	InterPro:L30e-like	UniProt:M1AS22	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465
EnsemblPlantsGene:PGSC0003DMG401011162	PGSC:PGSC0003DMG401011162	EnsemblPlants:PGSC0003DMT400028999	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1
InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676
UniParc:UPI000294CFF7	RefSeq:XP_006343581.1	RefSeq:XP_006343582.1	RefSeq:XP_006343583.1	RefSeq:XP_006343584.1	InterPro:eRF1_1_Pelota
InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg	:	:	:

Description

Eukaryotic peptide chain release factor subunit 1-1 [Source:PGSC_GENE;Acc:PGSC0003DMG401011162]

Coordinates

chr7:+:1502270..1503583

Molecular Weight (calculated)

49148.3 Da

IEP (calculated)

5.273

GRAVY (calculated)

-0.424

Length

437 amino acids

Sequence
(BLAST)

001: MADSHDNDKN IEIWKIKKLI KALEAARGNG TSMISLIMPP RDQVSRVTKM LGDEFGTASN IKSRVNRQSV LGAITSAQQR LKLYNKVPPN GLVLYTGTII
101: TEDGKEKKVT IDFEPFRPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FYINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLQAK ILNVVDVSYG GENGFNQAIE LSAEVLANVK FIQEKKLIGK YFEEISQDTG
301: KYVFGIDDTL KVLEMGAIET LIVWENLDIN RYVLKNNTSG ETIIKHLNKE QDTVQSNFRD PDTNAELEVQ DKLSLLEWFA NEYRRFGCSL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDV RAFDELSDDG EVYEDSE

Best Arabidopsis Sequence Match ( AT5G47880.1 )
(BLAST)

001: MGDKNDDDKN IEIWKIKKLI KSLEAARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV
101: NEDGKEKKVT IDFEPFRPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ YYINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLAAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKRLIGK YFEEISQDTG
301: KYVFGVEDTL NALESGAIET LIVWENLDIN RYVMKNSATG ETVIKHLNKE QEANTENFKV ADSDLALDVE EKLSLLEWLA NEYRRFGCAL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDM TAFDSEDGEA LDDDSE

Arabidopsis Description

ERF1-1ERF1-1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFY7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.