Factsheet for GSMUA_Achr10P25560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	GSMUA_Achr10P...	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P10000_001	Banana	cytosol	94.01	94.01
GSMUA_Achr10P...	Banana	cytosol	91.9	93.55
GSMUA_Achr8P09860_001	Banana	cytosol	73.24	67.31
KRG94758	Soybean	cytosol, endoplasmic reticulum	75.0	61.38
EER93602	Sorghum	cytosol	94.37	61.33
Os03t0702800-01	Rice	cytosol, plasma membrane	94.01	61.1
EER99630	Sorghum	cytosol	94.01	61.1
Os07t0587400-01	Rice	cytosol	93.66	60.87
KRH70101	Soybean	cytosol	93.31	60.64
KRH08442	Soybean	cytosol, nucleus	92.61	60.32
AT3G26618.1	Thale cress	cytosol	91.55	59.77
TraesCS2A01G192900.1	Wheat	cytosol	91.9	59.73
TraesCS2B01G213800.1	Wheat	cytosol	91.9	59.73
TraesCS4A01G273100.1	Wheat	cytosol	91.2	59.27
TraesCS4B01G040900.1	Wheat	cytosol	91.2	59.27
TraesCS4D01G038300.1	Wheat	cytosol	91.2	59.27
AT1G12920.1	Thale cress	cytosol	90.14	58.99
Solyc05g055210.1.1	Tomato	plastid	90.14	58.58
PGSC0003DMT400060405	Potato	cytosol	90.14	58.58
Solyc11g006660.1.1	Tomato	nucleus	89.79	58.35
PGSC0003DMT400019675	Potato	cytosol	89.79	58.35
KRH06769	Soybean	mitochondrion	70.07	53.93
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	92.61	47.91
CDX98026	Canola	cytosol	17.96	36.43
Zm00001d021144_P001	Maize	cytosol	17.96	28.65
HORVU3Hr1G060530.4	Barley	cytosol	16.2	18.93
Bra019799.1-P	Field mustard	cytosol	3.52	9.71
GSMUA_Achr6P09990_001	Banana	cytosol	0.7	2.38
GSMUA_Achr10P...	Banana	cytosol	0.7	2.25
GSMUA_Achr10P...	Banana	cytosol	0.7	2.0

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G25560_001	EnsemblPlants:GSMUA_Achr10P25560_001	EnsemblPlants:GSMUA_Achr10T25560_001
InterPro:IPR024049	UniProt:M0RLD0	PFAM:PF03463	PFAM:PF03464	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55481	TIGRFAMs:TIGR03676
UniParc:UPI000296B08B	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	:	:	:

Description

Eukaryotic peptide chain release factor subunit 1-3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G25560_001]

Coordinates

chr10:-:29512741..29514680

Molecular Weight (calculated)

31625.1 Da

IEP (calculated)

8.906

GRAVY (calculated)

-0.287

Length

284 amino acids

Sequence
(BLAST)

001: MADGHETDKN IEIWKIKKLI KALESTRGNG TSMISLVMPP RDQISRVTKM LADEYGTASN IKSRVNPQSV LAAITSAQQR LKLYNKVPPN GLVLYTGTIV
101: TEDGKEKKVT IDFEPFKPIN VSLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTHEVLHK FTVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ FFINPATSQP NVAGLILAGS ADFKTELSQS DMFDPRLQAK ILNVVDVSYG GENGFNQAIE LSAEIFMSLV WMTH

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.