Factsheet for GSMUA_Achr11P05940_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	GSMUA_Achr10P...	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09860_001	Banana	cytosol	55.19	98.06
GSMUA_Achr6P10000_001	Banana	cytosol	49.18	95.07
GSMUA_Achr10P...	Banana	cytosol	48.09	94.62
GSMUA_Achr10P...	Banana	cytosol	47.91	92.61
EER93602	Sorghum	cytosol	68.49	86.04
KRH70101	Soybean	cytosol	68.49	86.04
Os03t0702800-01	Rice	cytosol, plasma membrane	68.12	85.58
KRH08442	Soybean	cytosol, nucleus	67.94	85.55
TraesCS2B01G213800.1	Wheat	cytosol	67.94	85.35
EER99630	Sorghum	cytosol	67.94	85.35
TraesCS2A01G192900.1	Wheat	cytosol	67.94	85.35
AT3G26618.1	Thale cress	cytosol	67.58	85.29
AT1G12920.1	Thale cress	cytosol	67.21	85.02
Os07t0587400-01	Rice	cytosol	67.4	84.67
TraesCS4A01G273100.1	Wheat	cytosol	66.67	83.75
TraesCS4B01G040900.1	Wheat	cytosol	66.67	83.75
TraesCS4D01G038300.1	Wheat	cytosol	66.67	83.75
KRH06769	Soybean	mitochondrion	55.92	83.2
GSMUA_Achr6P09990_001	Banana	cytosol	12.57	82.14
PGSC0003DMT400019675	Potato	cytosol	64.66	81.24
PGSC0003DMT400060405	Potato	cytosol	64.48	81.01
Solyc11g006660.1.1	Tomato	nucleus	64.48	81.01
Solyc05g055210.1.1	Tomato	plastid	64.3	80.78
KRG94758	Soybean	cytosol, endoplasmic reticulum	49.0	77.52
GSMUA_Achr10P...	Banana	cytosol	12.2	75.28
GSMUA_Achr10P...	Banana	cytosol	12.02	66.0
Zm00001d021144_P001	Maize	cytosol	16.58	51.12
HORVU3Hr1G060530.4	Barley	cytosol	19.67	44.44

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr11G05940_001	EnsemblPlants:GSMUA_Achr11P05940_001
EnsemblPlants:GSMUA_Achr11T05940_001	InterPro:IPR024049	InterPro:IPR029064	InterPro:L30e-like	UniProt:M0RPS4	PFAM:PF03463
PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N
SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676	UniParc:UPI000295189C
InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg	:	:

Description

Eukaryotic peptide chain release factor subunit 1-3 [Source:GMGC_GENE;Acc:GSMUA_Achr11G05940_001]

Coordinates

chr11:-:4412067..4418389

Molecular Weight (calculated)

61502.5 Da

IEP (calculated)

9.725

GRAVY (calculated)

-0.326

Length

549 amino acids

Sequence
(BLAST)

001: MVRVLSLSSV SLAHSKKTFK WDPLYSNITR ITSVRTRVFY PAGKSCRRSS VSGFTSLNML HTRVTYAHGV RAGIMWLKKR SSSDAAGNYV SATGSCQNSI
101: YIFASFASSS PIPDASRGRN LRLRSVGAIS YSRTSPPRSF EVGFPRLFRH KLAEMAETDK NIEIWKVKKL IKALEAARGN GTSMISLIMP PRDQVSRVTK
201: MLGDEYGTAS NIKSRVNRQS VLGAITSAQQ RLKLYNKVPP NGLVLYTGTI VTEDGKEKKV TIDFEPFKPI NASLYLCDNK FHTEALNELL ESDDKFGFIV
301: MDGNGTLFGT LSGNTREVLH KFTVDLPKKH GRGGQSALRF ARLRMEKRHN YVRKTAELAT QFFINPATSQ PNVAGLILAG SADFKTELSQ SDMFDQRLQA
401: KILNVVDVSY GGENGFNQAI ELSAEILSNV KFIQEKKLIG KYFEEISQDT GKYVFGVEDT LKALEMGAVE TLIVWENLDI NRYEKISLLE WFANEYKRFG
501: CTLEFVTNKS QEGSQFCRGF GGIGGILRYQ LDLRAFDELS DQEYDEDSE

Best Arabidopsis Sequence Match ( AT3G26618.1 )
(BLAST)

001: MADQESDKNI EIWKIKKLIK GLETARGNGT SMISLIMPPR DQVARVTKML ADEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPPNG LVLYTGTIVT
101: DDGKEKKVTI DFEPFKPINA SLYLCDNKFH TEPLNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VSGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAVETL IVWENLDINR YELKNNTTGE IVIKHLGKDQ ENNQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GLLRYQLDMR TFDELSDGEV YEDSD

Arabidopsis Description

ERF1-3ERF1-3 [Source:UniProtKB/TrEMBL;Acc:A0A178VIS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.