Factsheet for Bra016748.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003355.1-P
Bra007417.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12920.1	Bra003355.1-P	AT3G58750.1	21798944
AT1G12920.1	Bra007417.1-P	AT3G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21074	Canola	cytosol	100.0	100.0
CDY34600	Canola	cytosol	38.39	100.0
AT1G12920.1	Thale cress	cytosol	97.7	97.93
Bra034244.1-P	Field mustard	cytosol	94.25	94.25
EER93602	Sorghum	cytosol	90.8	90.39
Zm00001d013481_P001	Maize	cytosol, extracellular	90.57	90.16
TraesCS2A01G192900.1	Wheat	cytosol	90.34	89.93
Zm00001d006725_P001	Maize	cytosol, extracellular	90.11	89.7
EER99630	Sorghum	cytosol	90.11	89.7
TraesCS2B01G213800.1	Wheat	cytosol	90.11	89.7
Os03t0702800-01	Rice	cytosol, plasma membrane	89.89	89.47
Os07t0587400-01	Rice	cytosol	89.43	89.02
TraesCS4D01G038300.1	Wheat	cytosol	88.28	87.87
TraesCS4B01G040900.1	Wheat	cytosol	88.28	87.87
TraesCS4A01G273100.1	Wheat	cytosol	88.28	87.87
HORVU4Hr1G006500.2	Barley	cytosol	88.74	87.33
Bra037523.1-P	Field mustard	cytosol	84.83	85.02
HORVU2Hr1G035400.1	Barley	cytosol	89.66	82.28
Bra020726.1-P	Field mustard	cytosol	25.52	42.69
Bra019799.1-P	Field mustard	cytosol	8.51	35.92

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	EnsemblPlantsGene:Bra016748	EnsemblPlants:Bra016748.1
EnsemblPlants:Bra016748.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886
GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019538	InterPro:IPR024049	InterPro:IPR029064
InterPro:L30e-like	UniProt:M4DJS0	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113
PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315
SUPFAM:SSF55481	TIGRFAMs:TIGR03676	UniParc:UPI0001C00E98	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3

Description

AT1G12920 (E=1e-245) ERF1-2 | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2); translation release factor

Coordinates

chrA08:+:19801670..19802977

Molecular Weight (calculated)

48919.0 Da

IEP (calculated)

5.074

GRAVY (calculated)

-0.446

Length

435 amino acids

Sequence
(BLAST)

001: MADQEADTNI EIWKIKKLIK GLESARGNGT SMISLIMPPR DQVSRVTKML GDEYGTASNI KSRVNRQSVL SAITSAQQRL KLYNKVPTNG LVLYTGTIVN
101: DDGKEKKVTF DFEPFRPINA SLYLCDNKFH TGALNELLES DDKFGFIVMD GNGTLFGTLS GNTREVLHKF TVDLPKKHGR GGQSALRFAR LRMEKRHNYV
201: RKTAELATQF YINPATSQPN VAGLILAGSA DFKTELSQSE LFDPRLQAKI LNVVDVSYGG ENGFNQAIEL SAEILSNVKF IQEKKLIGKY FEEISQDTGK
301: YVFGVEDTLK ALEMGAIETL IVWENLDINR YELKNSTSGE IVVKHFGKDQ ETDQSNFHDA ETNAELEVQE KMPLLEWFAN EYKRFGCTLE FVTNKSQEGS
401: QFCRGFGGIG GMLRYQLDMR TFDELSDGEV YEDSD

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.