CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85313	Canola	cytosol	83.25	80.18
CDX86338	Canola	cytosol	83.01	79.95
AT5G47880.1	Thale cress	cytosol	80.62	77.29
CDY00188	Canola	cytosol	74.88	71.95
CDY34600	Canola	cytosol	28.71	71.86
CDY56364	Canola	cytosol	74.64	71.72
CDY21074	Canola	cytosol	73.92	71.03
CDY19410	Canola	cytosol	24.64	64.38
CDY14497	Canola	cytosol	22.01	52.87
CDX98026	Canola	cytosol	17.22	51.43
CDY45916	Canola	cytosol	28.95	46.54

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:A0A078HDH7	UniProt:A0A078HDH7
EnsemblPlants:CDY35766	ProteinID:CDY35766	ProteinID:CDY35766.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003747	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00059216001	InterPro:IPR024049	InterPro:IPR029064
InterPro:L30e-like	PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19
InterPro:Peptide_chain-rel_eRF1/aRF1	InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481
TIGRFAMs:TIGR03676	UniParc:UPI0004EE9DA6	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg

Description

BnaC02g38280DBnaC02g38280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDH7]

Coordinates

chrLK032360:+:54767..56023

Molecular Weight (calculated)

46750.5 Da

IEP (calculated)

5.511

GRAVY (calculated)

-0.409

Length

418 amino acids

Sequence
(BLAST)

001: MGDNHNDDKS IEIWKMKKLI KSLEAAKGNG TSMISLIMPP RDHISRATKL LCDEYGTASN IKSRVNRLSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV
101: NEEGKEKKVT IDFEPFRPIN NTLYLCDNKF HTEAINELLE SHDKFGFIVM DGKGTLFGTL SGCTSDVLHK FTVDLPKNHG RGGQSALRFH RLGKEKRHNY
201: LRKTAELATQ YYISPSTNQP NVSGLILAGS ADFKTKLSQS DMFDPRLRAK ILNVVEVQHG GDIGFNEAIK KSSEILLIGK YFNEVNQGTG KYVVGVEDTL
301: NAFDSGAVET LIVWENLDIY RYVLKNSVTG ETVIKHLNKE EEVNSDFSVE DKVLLLEWLA NEYKRFGCAL EFVTNKSQEG DTFCKGLGGV GGILRYQLDV
401: ADFDEEEDLD VSDDDESE

Best Arabidopsis Sequence Match ( AT1G12920.1 )
(BLAST)

001: MAEEADTNIE IWKIKKLIKG LESARGNGTS MISLIMPPRD QVSRVTKMLG DEYGTASNIK SRVNRQSVLS AITSAQQRLK LYNKVPTNGL VLYTGTIVND
101: DGKEKKVTFD FEPFRPINAS LYLCDNKFHT EALNELLESD DKFGFIVMDG NGTLFGTLSG NTREVLHKFT VDLPKKHGRG GQSALRFARL RMEKRHNYVR
201: KTAELATQFY INPATSQPNV SGLILAGSAD FKTELSQSEL FDPRLQAKIL NVVDVSYGGE NGFNQAIELS AEILSNVKFI QEKKLIGKYF EEISQDTGKY
301: VFGVEDTLKA LEMGAIETLI VWENLDINRY ELKNSTTGEM VVKHFGKDQE SDTSNFHDSE TNAELEVQEK MPLLEWFANE YKRFGCTLEF VTNKSQEGSQ
401: FCRGFGGIGG MLRYQLDMRT FDELSDTEVY EDSD

Arabidopsis Description

ERF1-2Eukaryotic peptide chain release factor subunit 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.