CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037523.1-P	Field mustard	cytosol	99.77	99.77
CDX85313	Canola	cytosol	99.54	99.54
AT5G47880.1	Thale cress	cytosol	93.09	92.66
CDY00188	Canola	cytosol	86.18	85.98
CDY56364	Canola	cytosol	85.71	85.52
CDY21074	Canola	cytosol	84.79	84.6
CDY35766	Canola	cytosol	79.95	83.01
CDY34600	Canola	cytosol	31.34	81.44
CDY19410	Canola	cytosol	29.95	81.25
CDY14497	Canola	cytosol	25.58	63.79
CDX98026	Canola	cytosol	17.74	55.0
CDY45916	Canola	cytosol	27.19	45.38

Protein Annotations

MapMan:17.3.2.1.1	Gene3D:3.30.1330.30	Gene3D:3.30.420.60	Gene3D:3.30.960.10	GO:A0A078DG90	EnsemblPlants:CDX86338
ProteinID:CDX86338	ProteinID:CDX86338.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00144460001	InterPro:IPR024049	InterPro:IPR029064	InterPro:L30e-like
PFAM:PF03463	PFAM:PF03464	PFAM:PF03465	PANTHER:PTHR10113	PANTHER:PTHR10113:SF19	InterPro:Peptide_chain-rel_eRF1/aRF1
InterPro:Release_factor_eRF1/aRF1_N	SMART:SM01194	SUPFAM:SSF53137	SUPFAM:SSF55315	SUPFAM:SSF55481	TIGRFAMs:TIGR03676
UniParc:UPI0004EF0283	InterPro:eRF1_1_Pelota	InterPro:eRF1_2	InterPro:eRF1_3	SEG:seg	:

Description

BnaA06g30550D

Coordinates

chrLK031845:+:997035..999563

Molecular Weight (calculated)

48699.6 Da

IEP (calculated)

4.924

GRAVY (calculated)

-0.466

Length

434 amino acids

Sequence
(BLAST)

001: MGDNHGDDKN IEIWKIKKLI KSLEAARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV
101: NDEGKEKKVT IDFEPFKPIN NTLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ YYINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLAAK ILNVVDVSYG GENGFNQAIE LSSEILANVK FIQEKRLIGK YFEEISQDTG
301: KYVFGVEDTL NALDSGAVET LIVWENLDIN RYVLKNSATG ETVIKHLNKE QEANTENFKV DNNDLDVEDK MSLLEWLANE YKRFGCALEF VTNKSQEGSQ
401: FCRGFGGIGG ILRYQLDMTA FDEDLDVYDD DESE

Best Arabidopsis Sequence Match ( AT5G47880.1 )
(BLAST)

001: MGDKNDDDKN IEIWKIKKLI KSLEAARGNG TSMISLIMPP RDQVSRVTKM LGDEYGTASN IKSRVNRQSV LGAITSAQQR LKLYNRVPPN GLVLYTGTIV
101: NEDGKEKKVT IDFEPFRPIN ASLYLCDNKF HTEALNELLE SDDKFGFIVM DGNGTLFGTL SGNTREVLHK FSVDLPKKHG RGGQSALRFA RLRMEKRHNY
201: VRKTAELATQ YYINPATSQP NVSGLILAGS ADFKTELSQS DMFDPRLAAK ILNVVDVSYG GENGFNQAIE LSAEILANVK FIQEKRLIGK YFEEISQDTG
301: KYVFGVEDTL NALESGAIET LIVWENLDIN RYVMKNSATG ETVIKHLNKE QEANTENFKV ADSDLALDVE EKLSLLEWLA NEYRRFGCAL EFVTNKSQEG
401: SQFCRGFGGI GGILRYQLDM TAFDSEDGEA LDDDSE

Arabidopsis Description

ERF1-1ERF1-1 [Source:UniProtKB/TrEMBL;Acc:A0A178UFY7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.