Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61809 | Canola | cytosol | 93.16 | 92.37 |
| Bra017318.1-P | Field mustard | plastid | 55.13 | 33.25 |
| CDY32125 | Canola | plastid | 55.13 | 33.25 |
| AT2G35500.1 | Thale cress | plastid | 52.56 | 31.78 |
| HORVU1Hr1G050970.1 | Barley | cytosol | 32.48 | 29.57 |
| KRH74369 | Soybean | plastid | 41.03 | 26.02 |
| VIT_02s0012g01800.t01 | Wine grape | plastid | 41.03 | 25.88 |
| PGSC0003DMT400038338 | Potato | plastid | 37.61 | 23.1 |
| Solyc08g076410.2.1 | Tomato | plastid | 38.03 | 23.06 |
| GSMUA_Achr2P12160_001 | Banana | plastid | 36.32 | 21.91 |
| TraesCS1D01G199100.1 | Wheat | plastid | 32.48 | 20.11 |
| TraesCS1A01G195500.2 | Wheat | plastid | 32.05 | 19.79 |
| Os10t0577700-01 | Rice | plastid | 31.62 | 19.73 |
| EER94425 | Sorghum | plastid | 32.48 | 19.64 |
| Zm00001d030109_P002 | Maize | plastid | 33.33 | 19.5 |
| KRH49412 | Soybean | cytosol | 17.09 | 17.09 |
Protein Annotations
| EnsemblPlants:CDX94450 | EnsemblPlantsGene:GSBRNA2T00157605001 | PANTHER:PTHR21087 | PANTHER:PTHR21087:SF11 | ProteinID:CDX94450 | ProteinID:CDX94450.1 |
| SEG:seg | UniParc:UPI0004EEF91D | MapMan:35.1 | : | : | : |
Description
BnaC01g17340D
Coordinates
chrLK031881:+:1284729..1286334
Molecular Weight (calculated)
26354.1 Da
IEP (calculated)
8.118
GRAVY (calculated)
-0.464
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSSILFQN RSQPYVFQPW SCFVADKEEK KEGAEEEYCK KSIYIRLGCR SSHQVFLNNA LLLERFSKQT IDFWILAEGE DFVAEAESSV LESLSSHVRT
101: IVSTLGGKHG AVGGADKWRH LYSGFTVLVS QTEATDEESA KEEGDWLFKR RRGGEAPSAL KQLIILDKGL PGKKSPYIRL GCRGDWPNIK PWGWDPSSDT
201: GAHPSFSYVF LKQCSFVLSS IKPSNKRYKE LSCN
101: IVSTLGGKHG AVGGADKWRH LYSGFTVLVS QTEATDEESA KEEGDWLFKR RRGGEAPSAL KQLIILDKGL PGKKSPYIRL GCRGDWPNIK PWGWDPSSDT
201: GAHPSFSYVF LKQCSFVLSS IKPSNKRYKE LSCN
001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT
Arabidopsis Description
SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.