CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90241
KRG99420
KRH04275
KRH16959
KRH23958
KRH28216
KRH33469
KRH39841
KRH45608
KRH53667
KRH57556
KRH64261
KRH69629
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	KRG90241	AT2G33150.1	21798944
AT2G35500.1	KRH33469	AT2G33150.1	21798944
AT2G35500.1	KRG99420	AT2G42490.1	21798944
AT2G35500.1	KRH45608	AT2G42490.1	21798944
AT2G35500.1	KRH69629	AT2G42490.1	21798944
AT2G35500.1	KRH16959	AT3G49580.1	21798944
AT2G35500.1	KRH53667	AT3G49580.1	21798944
AT2G35500.1	KRH64261	AT3G49580.1	21798944
AT2G35500.1	KRH04275	AT4G17680.1	21798944
AT2G35500.1	KRH28216	AT4G17680.1	21798944
AT2G35500.1	KRH57556	AT4G17680.1	21798944
AT2G35500.1	KRH77271	AT4G17680.1	21798944
AT2G35500.1	KRH23958	AT4G25200.1	21798944
AT2G35500.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74369	Soybean	plastid	66.67	42.28
HORVU1Hr1G050970.1	Barley	cytosol	36.32	33.07
VIT_02s0012g01800.t01	Wine grape	plastid	50.85	32.08
AT2G35500.1	Thale cress	plastid	47.01	28.42
PGSC0003DMT400038338	Potato	plastid	45.73	28.08
Solyc08g076410.2.1	Tomato	plastid	46.15	27.98
Bra017318.1-P	Field mustard	plastid	45.73	27.58
TraesCS1A01G195500.2	Wheat	plastid	44.44	27.44
CDY32125	Canola	plastid	45.3	27.32
Os10t0577700-01	Rice	plastid	43.59	27.2
TraesCS1D01G199100.1	Wheat	plastid	43.59	26.98
GSMUA_Achr2P12160_001	Banana	plastid	44.44	26.8
EER94425	Sorghum	plastid	43.16	26.1
Zm00001d030109_P002	Maize	plastid	42.73	25.0
CDY61809	Canola	cytosol	17.52	17.37
CDX94450	Canola	cytosol	17.09	17.09

Protein Annotations

Gene3D:2.60.40.790	Gene3D:3.40.50.2000	MapMan:35.1	EMBL:ACUP02004361	InterPro:CS_dom	EnsemblPlantsGene:GLYMA_07G152600
GO:GO:0000033	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005975
GO:GO:0005985	GO:GO:0006464	GO:GO:0006490	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016157	GO:GO:0016740	GO:GO:0019538
GO:GO:0033577	GO:GO:0097502	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978	UniProt:K7L1W4
EnsemblPlants:KRH49412	ProteinID:KRH49412	ProteinID:KRH49412.1	PFAM:PF00862	PFscan:PS51203	PANTHER:PTHR21087
PANTHER:PTHR21087:SF11	SUPFAM:SSF49764	InterPro:Sucrose_synth	UniParc:UPI000294E176	:	:

Description

hypothetical protein

Coordinates

chr7:-:18519080..18521368

Molecular Weight (calculated)

26218.6 Da

IEP (calculated)

4.259

GRAVY (calculated)

0.005

Length

234 amino acids

Sequence
(BLAST)

001: MELRLNIGGL DVRSSRDISV DTNDTSLAII LRPGSPITLI ETNPLFDRVK SSETIWYIDD DQLVVNFKKQ DPDLRWPDIM ESWESLIAGS PQLLEGTSIY
101: LVGDSTEINQ KGGPKASNWY TPLSTKELLE LYTKQTVDLW LLAEGSNLVP EAESVVLESI SINQIHIYVK LPNMFNIVIL CIRGYFGQAA VLGLPDTGGQ
201: VVYILDQVRA LEEELLHKIE LQGLDVKPQI LVRL

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.