Factsheet for GSMUA_Achr2P12160_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr6P06650_001
GSMUA_Achr6P12170_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	GSMUA_Achr10P...	AT2G42490.1	21798944
AT2G35500.1	GSMUA_Achr6P06650_001	AT2G42490.1	21798944
AT2G35500.1	GSMUA_Achr6P12170_001	AT2G42490.1	21798944
AT2G35500.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT2G35500.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT2G35500.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT2G35500.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT2G35500.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT2G35500.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944
AT2G35500.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G050970.1	Barley	cytosol	39.43	59.53
VIT_02s0012g01800.t01	Wine grape	plastid	56.44	59.03
AT2G35500.1	Thale cress	plastid	54.9	55.04
KRH74369	Soybean	plastid	52.32	55.01
Bra017318.1-P	Field mustard	plastid	53.61	53.61
CDY32125	Canola	plastid	53.61	53.61
Os10t0577700-01	Rice	plastid	50.0	51.73
PGSC0003DMT400038338	Potato	plastid	50.77	51.71
EER94425	Sorghum	plastid	51.29	51.42
TraesCS1A01G195500.2	Wheat	plastid	49.74	50.92
Solyc08g076410.2.1	Tomato	plastid	50.52	50.78
TraesCS1D01G199100.1	Wheat	plastid	48.71	50.0
Zm00001d030109_P002	Maize	plastid	51.03	49.5
KRH49412	Soybean	cytosol	26.8	44.44
CDY61809	Canola	cytosol	22.42	36.86
CDX94450	Canola	cytosol	21.91	36.32

Protein Annotations

KEGG:00400+2.7.1.71	Gene3D:2.60.40.790	Gene3D:3.40.50.300	MapMan:35.1	InterPro:CS_dom	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	EnsemblPlantsGene:GSMUA_Achr2G12160_001
EnsemblPlants:GSMUA_Achr2P12160_001	EnsemblPlants:GSMUA_Achr2T12160_001	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978	UniProt:M0S7A7
PFAM:PF01202	PFAM:PF04969	PFscan:PS51203	PANTHER:PTHR21087	PANTHER:PTHR21087:SF11	SUPFAM:SSF49764
InterPro:Shikimate/glucono_kinase	UniParc:UPI0002967474	SEG:seg	:	:	:

Description

Putative Shikimate kinase [Source:GMGC_GENE;Acc:GSMUA_Achr2G12160_001]

Coordinates

chr2:+:14687124..14694923

Molecular Weight (calculated)

42789.8 Da

IEP (calculated)

4.959

GRAVY (calculated)

-0.262

Length

388 amino acids

Sequence
(BLAST)

001: MAAALLNSPL SISTQNPKKT LGIPLQDFPL LNPRLSRFDR RKLISSPFSF SSLILSNRNG VLNRLQSVSG GHVSAIPVES KNYEFSDGDA DVELRLDISK
101: LDIMSPSDIF VDMDETSLLV RVKASGTLIT LMEANCLFER IKPSETIWYI DEDQLVVNLK KCDRDLKWPD VMESWESLTK GILQLLKGTS IYIVGDSTEI
201: NEKVGSELAT GIGYIPFSTS DLLERYAQQS IESWVVSDGA DSVAEAEGSI LQSLSSHARS VVATLGGEHG AARTHDKWRY LHAGFTVWFQ QNIGMDEASA
301: KEEARRHVQD GRLAYSNADI VMKLGGWEPD QSRVVAQACL SALKQLTLSD KQLTGKKSLY VRLGCRGDWP DIKPPGWDPS SGVDPPES

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.