Factsheet for GSMUA_Achr6P06650_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P06220_001
GSMUA_Achr4P05600_001
GSMUA_Achr4P12250_001
GSMUA_Achr5P27350_001
GSMUA_Achr5P27360_001
GSMUA_Achr6P06650_001
GSMUA_Achr6P12170_001
GSMUA_Achr9P18410_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42490.1	GSMUA_Achr3P06220_001	AT1G13520.1	21798944
AT2G42490.1	GSMUA_Achr5P27350_001	AT1G13520.1	21798944
AT2G42490.1	GSMUA_Achr5P27360_001	AT1G13520.1	21798944
AT2G42490.1	GSMUA_Achr9P18410_001	AT1G13520.1	21798944
AT2G42490.1	GSMUA_Achr10P...	AT2G42490.1	21798944
AT2G42490.1	GSMUA_Achr6P06650_001	AT2G42490.1	21798944
AT2G42490.1	GSMUA_Achr6P12170_001	AT2G42490.1	21798944
AT2G42490.1	GSMUA_Achr11P...	AT5G46570.1	21798944
AT2G42490.1	GSMUA_Achr4P05600_001	AT5G46570.1	21798944
AT2G42490.1	GSMUA_Achr4P12250_001	AT5G46570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	peroxisome	90.83	89.42
Os04t0476100-01	Rice	peroxisome	64.9	87.45
KRH69629	Soybean	peroxisome	88.97	81.71
KRG99420	Soybean	plastid	88.4	80.76
VIT_00s0225g00090.t01	Wine grape	peroxisome	89.4	80.62
KRH45608	Soybean	mitochondrion	88.4	80.55
TraesCS6D01G191300.1	Wheat	peroxisome	85.96	79.68
TraesCS6B01G236300.4	Wheat	cytosol	74.21	79.57
HORVU6Hr1G053060.2	Barley	peroxisome	84.81	79.25
OQU89852	Sorghum	cytosol	72.21	79.25
HORVU2Hr1G082420.6	Barley	cytosol	67.05	79.19
TraesCS6A01G207600.3	Wheat	peroxisome	85.39	79.15
EES12364	Sorghum	peroxisome	87.97	78.52
TraesCS2A01G327600.1	Wheat	golgi	86.53	78.34
Zm00001d003309_P002	Maize	mitochondrion, peroxisome	87.39	78.21
Os04t0136200-00	Rice	cytosol, peroxisome	68.62	78.14
Os02t0593100-00	Rice	cytosol	52.15	78.11
TraesCS2D01G335300.1	Wheat	peroxisome, unclear	86.53	77.94
TraesCS2B01G354400.1	Wheat	peroxisome	86.39	77.91
VIT_17s0000g09100.t01	Wine grape	peroxisome	87.39	77.12
Solyc05g013440.2.1	Tomato	peroxisome, plastid	85.53	76.93
CDY47975	Canola	peroxisome	85.39	76.9
CDY14839	Canola	peroxisome, plastid	85.39	76.9
GSMUA_Achr6P12170_001	Banana	peroxisome	88.25	76.71
KRH54329	Soybean	plastid	84.96	76.61
AT2G42490.1	Thale cress	peroxisome	84.81	76.29
Bra016871.1-P	Field mustard	plastid	84.67	75.1
Solyc06g071700.1.1	Tomato	plastid	83.24	75.06
PGSC0003DMT400059626	Potato	peroxisome	84.1	74.68
Solyc08g014330.2.1	Tomato	peroxisome, plastid	84.1	74.49
PGSC0003DMT400069411	Potato	plastid	72.64	73.48
KRH74530	Soybean	cytosol	26.36	60.33
CDY35376	Canola	plastid	84.53	55.4
CDY22564	Canola	peroxisome, plastid	84.81	55.07
KRH03234	Soybean	nucleus	81.23	43.35
GSMUA_Achr8P15510_001	Banana	extracellular, golgi, vacuole	18.48	29.86
GSMUA_Achr9P11130_001	Banana	extracellular, vacuole	27.65	28.81
GSMUA_Achr8P03320_001	Banana	extracellular, golgi	27.36	28.21
GSMUA_Achr1P19790_001	Banana	extracellular, vacuole	25.93	26.12
GSMUA_Achr8P15520_001	Banana	cytosol, peroxisome, plastid	8.88	24.03
GSMUA_Achr8P19360_001	Banana	extracellular, golgi	9.03	19.15

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:50.1.4	InterPro:Cu_amine_oxidase	InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf
InterPro:Cu_amine_oxidase_N-reg	InterPro:Cu_amine_oxidase_N2	InterPro:Cu_amine_oxidase_N3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0008131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009308	GO:GO:0016491
GO:GO:0046872	GO:GO:0048038	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G06650_001	EnsemblPlants:GSMUA_Achr6P06650_001	EnsemblPlants:GSMUA_Achr6T06650_001
InterPro:IPR036460	UniProt:M0T4R3	PFAM:PF01179	PFAM:PF02727	PFAM:PF02728	PANTHER:PTHR10638
PANTHER:PTHR10638:SF18	SUPFAM:SSF49998	SUPFAM:SSF54416	UniParc:UPI0002954CE5	SEG:seg	:

Description

Putative Primary amine oxidase [Source:GMGC_GENE;Acc:GSMUA_Achr6G06650_001]

Coordinates

chr6:-:4492959..4501836

Molecular Weight (calculated)

78728.3 Da

IEP (calculated)

6.902

GRAVY (calculated)

-0.331

Length

698 amino acids

Sequence
(BLAST)

001: MMRAQTRHPL DPLSAAEISV AVATVRSAGA TPEVRDSMRF VEVVLLEPEK NIVALADAYF FPPFQPSLLP RTKGGPVILS KLPPRRARLV VYNKKSNETS
101: IWIVELSEVH AATRGGHHRG KVISSEVVPD VQPPMDAIEY AECEAAVKNY PPFIEAMRKR GVDDMDLVMV DAWCAGYHSD ADAPSRRLAK PLIFCRTESD
201: CPVENGYARP VEGIYILVDM QNNLIIEFED RKLVPLPPAD PLRNYTPGET RGGVDRSDIK PLHILQPEGP SFRINGYFVE WQKWSFRIGF TPREGLVIHS
301: VAYIDGSRGR RPVAHRLSFV EMVVPYGDPN EPHYRKNAFD AGEDGLGKNA HSLKRGCDCL GYIKYFDAHF TNYTGGIETI ENCVCLHEED HGILWKHQDW
401: RTGLAEVRRS RRLTVSFICT VANYEYGFFW HFYQDGKIEA EVKLTGILSL GALQPGESRK YGTTIAPGLY APVHQHFFVA RMDMAVDCKP TEAFNQVIEV
501: NAKVEDPGQN NVHNNAFYAE EKLLKSELEA MRDCDPFSAR HWIVRNTRTV NRTGQPTGYK LMPGLNCLPL AGPEAKFLRR AAFLKHNLWV TPYSRDEMYP
601: GGEFPNQNPR INEGLVTWVK KNRSLEEADI VLWYVFGITH IPRLEDWPVM PVDRIGFMLM PHGFFNCSPA VDVPPSANEI DKDGGSPKLI QNGLLAKL

Best Arabidopsis Sequence Match ( AT2G42490.1 )
(BLAST)

001: MASASKKTSA CPHHGGSLPP PKLVSAAPDT VAVWSDADDQ RASKVSLESV IRPVDSFPDN TAKKPANKGI SVMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDGM RFIEVASVEP DKQVVALADA YFFPPFQPSL LPRTKSGPVI PMKLPPRRAR LVVYNQKSNE TSVWIVALSE VHAVTRGGHH RGRVVSSQVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIEDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGSIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPAEAFNQVV EVNVRVDERG ENNVHNNAFY AEEKLLKSEA
601: VAMRDCDPLS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES
701: DVVLWYVFGI THVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPC ELETKESEVK EVVAPKALQT GLLSKL

Arabidopsis Description

Amine oxidase [Source:UniProtKB/TrEMBL;Acc:Q8L866]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.