CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
peroxisome 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94456
EES09009
EES12364
OQU80420
OQU89852

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42490.1	EES09009	AT1G13520.1	21798944
AT2G42490.1	OQU80420	AT1G13520.1	21798944
AT2G42490.1	EES12364	AT2G42490.1	21798944
AT2G42490.1	OQU89852	AT2G42490.1	21798944
AT2G42490.1	EER94456	AT5G46570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003309_P002	Maize	mitochondrion, peroxisome	98.47	98.72
Os04t0476100-01	Rice	peroxisome	64.19	96.91
TraesCS2D01G335300.1	Wheat	peroxisome, unclear	91.05	91.87
TraesCS2B01G354400.1	Wheat	peroxisome	90.92	91.86
TraesCS2A01G327600.1	Wheat	golgi	90.41	91.7
GSMUA_Achr6P06650_001	Banana	peroxisome	78.52	87.97
GSMUA_Achr10P...	Banana	peroxisome	78.39	86.46
HORVU2Hr1G082420.6	Barley	cytosol	65.22	86.29
OQU89852	Sorghum	cytosol	68.8	84.59
KRH69629	Soybean	peroxisome	78.64	80.92
KRG99420	Soybean	plastid	78.77	80.63
KRH45608	Soybean	mitochondrion	78.77	80.42
VIT_00s0225g00090.t01	Wine grape	peroxisome	79.28	80.1
VIT_17s0000g09100.t01	Wine grape	peroxisome	79.8	78.89
Solyc05g013440.2.1	Tomato	peroxisome, plastid	77.75	78.35
AT2G42490.1	Thale cress	peroxisome	77.49	78.09
CDY47975	Canola	peroxisome	77.37	78.06
CDY14839	Canola	peroxisome, plastid	77.37	78.06
KRH54329	Soybean	plastid	75.96	76.74
Bra016871.1-P	Field mustard	plastid	76.98	76.49
PGSC0003DMT400059626	Potato	peroxisome	76.85	76.46
Solyc08g014330.2.1	Tomato	peroxisome, plastid	76.6	76.02
Solyc06g071700.1.1	Tomato	plastid	75.19	75.97
GSMUA_Achr6P12170_001	Banana	peroxisome	78.01	75.97
PGSC0003DMT400069411	Potato	plastid	65.09	73.77
KRH74530	Soybean	cytosol	22.76	58.36
CDY35376	Canola	plastid	76.73	56.34
CDY22564	Canola	peroxisome, plastid	76.85	55.91
KRH03234	Soybean	nucleus	72.89	43.58
EES05551	Sorghum	extracellular	25.7	28.88
OQU88787	Sorghum	extracellular	25.45	27.95
EER97410	Sorghum	extracellular, vacuole	24.94	27.46
EES10538	Sorghum	extracellular, golgi	25.19	26.2

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:50.1.4	EntrezGene:8073581	UniProt:C5YAF5	InterPro:Cu_amine_oxidase
InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf	InterPro:Cu_amine_oxidase_N-reg	InterPro:Cu_amine_oxidase_N2	InterPro:Cu_amine_oxidase_N3	EnsemblPlants:EES12364
ProteinID:EES12364	ProteinID:EES12364.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507
GO:GO:0008131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009308	GO:GO:0016491	GO:GO:0046872
GO:GO:0048038	GO:GO:0055114	InterPro:IPR036460	PFAM:PF01179	PFAM:PF02727	PFAM:PF02728
PANTHER:PTHR10638	PANTHER:PTHR10638:SF18	EnsemblPlantsGene:SORBI_3006G119200	SUPFAM:SSF49998	SUPFAM:SSF54416	unigene:Sbi.6928
UniParc:UPI0001A871AA	RefSeq:XP_002448036.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:48615841..48622781

Molecular Weight (calculated)

86537.4 Da

IEP (calculated)

7.244

GRAVY (calculated)

-0.286

Length

782 amino acids

Sequence
(BLAST)

001: MAAAKEKASA CCSRDAPARV AGGAPVVPMR AIAASPVGKV VALAAGGGER VAASAAGASG AVIEEIAAVQ PTTAKASSKG IPIMTRAQRC HPLDPLSAAE
101: IAVAVATVRA AGRSPEERDS MRFVEVVLLE PEKNVVALAD AYFFPPFQPS LLPRSKGSAV IPSRLPPRRA RLVVYNKQSN ETSIWIVELS EVHAATRGGH
201: HRGKVISSEV VPDVQPAMDA MEYAECEATV KSYPPFIEAM KRRGVDDMDL VMVDAWCAGY YSEADAPSRR LGKPLIFCRT ESDSPMENGY ARPVEGIHVV
301: VDMQNNAVIE FEDRKLVPLP PPDHLRNYTP GETRGGVDRS DVKPLIINQP EGPSFRINGY FVEWQKWNFR IGFTPKEGLV IYSVAYVDGS RGRRPIAHRL
401: SFVEMVVPYG DPSEPHYRKN AFDAGEDGLG KNAHSLKKGC DCLGYIKYFD AHFTNFTGGV ETIENCVCLH EEDHGILWKH QDWRTGLAEV RRSRRLTVSF
501: ICTVANYEYG FYWHFYQDGK IEAEVKLTGI LSLGALMPGE SRKYGTTIAP GLYAPVHQHF FVARMDMAVD CKPNEAHNQV VEVNVKVESA GTHNVHNNAF
601: YAEEKLLKSE LQAMRDCDPS SARHWIVRNT RTVNRTGQPT GYRLVPGSNC LPLALPEAKF LRRAGFLKHN LWVTQYKRDE MFPGGEFPNQ NPRIHEGLPT
701: WVKKDRPLEE TDIVLWYVFG LTHIPRLEDW PVMPVEHIGF MLMPHGFFNC SPAVDVPPSS SDADVKEAES PKAIQNGLVS KL

Best Arabidopsis Sequence Match ( AT2G42490.1 )
(BLAST)

001: MASASKKTSA CPHHGGSLPP PKLVSAAPDT VAVWSDADDQ RASKVSLESV IRPVDSFPDN TAKKPANKGI SVMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDGM RFIEVASVEP DKQVVALADA YFFPPFQPSL LPRTKSGPVI PMKLPPRRAR LVVYNQKSNE TSVWIVALSE VHAVTRGGHH RGRVVSSQVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIEDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGSIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPAEAFNQVV EVNVRVDERG ENNVHNNAFY AEEKLLKSEA
601: VAMRDCDPLS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES
701: DVVLWYVFGI THVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPC ELETKESEVK EVVAPKALQT GLLSKL

Arabidopsis Description

Amine oxidase [Source:UniProtKB/TrEMBL;Acc:Q8L866]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.