CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
mitochondrion 1
peroxisome 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77672
CDY14839
CDY21099
CDY21100
CDY22564
CDY33480
CDY35376
CDY47975
CDY50165
CDY50167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42490.1	CDY21099	AT1G13520.1	21798944
AT2G42490.1	CDY21100	AT1G13520.1	21798944
AT2G42490.1	CDY50165	AT1G13520.1	21798944
AT2G42490.1	CDY50167	AT1G13520.1	21798944
AT2G42490.1	CDY14839	AT2G42490.1	21798944
AT2G42490.1	CDY22564	AT2G42490.1	21798944
AT2G42490.1	CDY35376	AT2G42490.1	21798944
AT2G42490.1	CDY47975	AT2G42490.1	21798944
AT2G42490.1	CDX77672	AT5G46570.1	21798944
AT2G42490.1	CDY33480	AT5G46570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14839	Canola	peroxisome, plastid	99.61	99.61
Bra016871.1-P	Field mustard	plastid	96.77	95.3
AT2G42490.1	Thale cress	peroxisome	93.29	93.17
Os04t0476100-01	Rice	peroxisome	57.29	85.71
GSMUA_Achr6P06650_001	Banana	peroxisome	76.9	85.39
GSMUA_Achr10P...	Banana	peroxisome	76.77	83.92
KRG99420	Soybean	plastid	80.52	81.68
KRH45608	Soybean	mitochondrion	80.52	81.46
KRH69629	Soybean	peroxisome	79.48	81.05
Os02t0593100-00	Rice	cytosol	48.39	80.47
TraesCS6B01G236300.4	Wheat	cytosol	67.48	80.34
TraesCS6D01G191300.1	Wheat	peroxisome	77.03	79.28
TraesCS6A01G207600.3	Wheat	peroxisome	76.77	79.02
HORVU6Hr1G053060.2	Barley	peroxisome	76.13	78.98
Solyc05g013440.2.1	Tomato	peroxisome, plastid	78.45	78.35
HORVU2Hr1G082420.6	Barley	cytosol	59.48	78.0
TraesCS2A01G327600.1	Wheat	golgi	77.42	77.82
TraesCS2D01G335300.1	Wheat	peroxisome, unclear	77.68	77.68
Os04t0136200-00	Rice	cytosol, peroxisome	61.42	77.65
TraesCS2B01G354400.1	Wheat	peroxisome	77.55	77.65
Zm00001d003309_P002	Maize	mitochondrion, peroxisome	77.94	77.44
EES12364	Sorghum	peroxisome	78.06	77.37
OQU89852	Sorghum	cytosol	63.1	76.89
GSMUA_Achr6P12170_001	Banana	peroxisome	76.0	73.35
CDY35376	Canola	plastid	91.1	66.29
CDY22564	Canola	peroxisome, plastid	91.48	65.95
CDY53725	Canola	cytosol	2.45	32.2
CDX77547	Canola	cytosol	4.77	31.09
CDY53724	Canola	extracellular	4.65	29.27
CDY27138	Canola	cytosol	14.19	29.26
CDY27135	Canola	cytosol	19.87	28.47
CDY25701	Canola	cytosol	20.39	27.92
CDY32205	Canola	extracellular, vacuole	22.71	27.24
CDX97351	Canola	extracellular, plasma membrane	25.55	26.65
CDY04409	Canola	extracellular, plasma membrane	25.03	26.11
CDY04405	Canola	cytosol	8.52	25.98
CDX97353	Canola	cytosol	13.68	25.98
CDY50266	Canola	extracellular, golgi	21.68	25.85
CDY54865	Canola	extracellular, golgi	21.55	25.69
CDY56663	Canola	extracellular, golgi, vacuole	19.87	24.6
CDY69801	Canola	cytosol	4.65	22.64

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:50.1.4	GO:A0A078IAR3	UniProt:A0A078IAR3	EnsemblPlants:CDY47975
ProteinID:CDY47975	ProteinID:CDY47975.1	InterPro:Cu_amine_oxidase	InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf	InterPro:Cu_amine_oxidase_N-reg
InterPro:Cu_amine_oxidase_N3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507	GO:GO:0008131
GO:GO:0008150	GO:GO:0008152	GO:GO:0009308	GO:GO:0016491	GO:GO:0046872	GO:GO:0048038
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00088600001	InterPro:IPR036460	PFAM:PF01179	PFAM:PF02728	PANTHER:PTHR10638
PANTHER:PTHR10638:SF18	MetaCyc:PWY-5751	SUPFAM:SSF49998	SUPFAM:SSF54416	UniParc:UPI0004EDC311	:

Description

BnaA04g24530DAmine oxidase [Source:UniProtKB/TrEMBL;Acc:A0A078IAR3]

Coordinates

chrLK032747:-:56841..61028

Molecular Weight (calculated)

86455.1 Da

IEP (calculated)

6.690

GRAVY (calculated)

-0.362

Length

775 amino acids

Sequence
(BLAST)

001: MASASKTATV CAHGGGGSSK LVSVAADTVA GSSEGEDRRD SSKFGLESVI RPVDSMPDTA KKPATKGISV MPMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDSM RFIEVASVEP EKNVVALADA YFFPPFQPSL LPRTKAGPVI PMRLPPRRAK LVVYNKKSNE TSVWIVELSE VHAVTRGGHH RGRVVSSEVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIDDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGTIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPGEAFNQVV EVNVRVDEPG ENNIHNNAFY AEEKLLRSEA
601: EAMRDCDPFS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYDPEEK FPGGEFPNQN PRSGEGLATW VKQNRSLEES
701: DVVLWYVFGI IHVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPA CELETKDSEV KEVVAAPKPG LLSKL

Best Arabidopsis Sequence Match ( AT2G42490.1 )
(BLAST)

001: MASASKKTSA CPHHGGSLPP PKLVSAAPDT VAVWSDADDQ RASKVSLESV IRPVDSFPDN TAKKPANKGI SVMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDGM RFIEVASVEP DKQVVALADA YFFPPFQPSL LPRTKSGPVI PMKLPPRRAR LVVYNQKSNE TSVWIVALSE VHAVTRGGHH RGRVVSSQVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIEDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGSIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPAEAFNQVV EVNVRVDERG ENNVHNNAFY AEEKLLKSEA
601: VAMRDCDPLS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES
701: DVVLWYVFGI THVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPC ELETKESEVK EVVAPKALQT GLLSKL

Arabidopsis Description

Amine oxidase [Source:UniProtKB/TrEMBL;Acc:Q8L866]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.