CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014912.1-P	Field mustard	cytosol	100.0	100.0
CDY53725	Canola	cytosol	42.02	84.75
CDY27138	Canola	cytosol	84.87	26.86
CDY56663	Canola	extracellular, golgi, vacuole	99.16	18.85
CDY27135	Canola	cytosol	81.51	17.93
CDX97353	Canola	cytosol	58.82	17.16
AT1G31690.1	Thale cress	extracellular	84.03	14.77
VIT_05s0020g03260.t01	Wine grape	extracellular, vacuole	75.63	13.49
AT1G31670.1	Thale cress	extracellular, plasma membrane	83.19	13.36
VIT_05s0020g03280.t01	Wine grape	extracellular, plasma membrane	75.63	13.35
KRG91286	Soybean	nucleus	72.27	12.7
CDY04405	Canola	cytosol	26.89	12.6
KRG91282	Soybean	extracellular	69.75	12.3
KRG91283	Soybean	extracellular	68.91	12.15
VIT_05s0020g03320.t01	Wine grape	extracellular, plasma membrane	66.39	11.69
CDY25701	Canola	cytosol	55.46	11.66
PGSC0003DMT400044197	Potato	extracellular, golgi	61.34	11.16
Solyc09g090490.1.1	Tomato	vacuole	58.82	11.13
PGSC0003DMT400044305	Potato	extracellular, golgi, vacuole	61.34	11.11
CDY50266	Canola	extracellular, golgi	56.3	10.31
CDY32205	Canola	extracellular, vacuole	55.46	10.22
CDY54865	Canola	extracellular, golgi	55.46	10.15
CDY04409	Canola	extracellular, plasma membrane	60.5	9.69
CDX97351	Canola	extracellular, plasma membrane	59.66	9.56
CDY47975	Canola	peroxisome	31.09	4.77
CDY14839	Canola	peroxisome, plastid	31.09	4.77
CDY35376	Canola	plastid	31.09	3.47
CDY22564	Canola	peroxisome, plastid	31.09	3.44
CDY53724	Canola	extracellular	1.68	1.63
CDY69801	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.70.98.20	MapMan:35.1	GO:A0A078CLF6	EnsemblPlants:CDX77547	ProteinID:CDX77547	ProteinID:CDX77547.1
InterPro:Cu_amine_oxidase	InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005507	GO:GO:0008131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009308	GO:GO:0048038
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00128444001	InterPro:IPR036460	PFAM:PF01179	ScanProsite:PS01165	PANTHER:PTHR10638
PANTHER:PTHR10638:SF36	SUPFAM:SSF49998	UniParc:UPI0002540ED5	:	:	:

Description

BnaA07g06850D

Coordinates

chrLK031811:-:1667458..1668075

Molecular Weight (calculated)

13806.2 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.634

Length

119 amino acids

Sequence
(BLAST)

001: MAHDDYPQIR GAFTNYNVWI TLYNKSEVWA SGLYADRSQG DDTLAVWSQR NREIEKKDIV MWYTVGFHHV PCQEDFPTMP TLSSGFELRP ANFFEQNPVL
101: KTKPIKLSSA PKCTPKNEY

Best Arabidopsis Sequence Match ( AT1G31670.1 )
(BLAST)

001: MVNRDNSIVA LSFFMLFLLV LHLHFETTTA ARKPVRVFGP PSSIEWSPPS PPKDDFEWFE INIYKNIEQT AFRPTGQGPS QGIGHKDPPV FSSVFVIGSL
101: SFIPPPHPFD PLTEIELNLV RNIINERYPI GLEHRFTFQY VGLNEPDKSL VLSWVSSQYH NVKSPPRQAF VIARDHGKTR EIVVDFASQA IVSEKIHVGN
201: GYPMLTIDEQ QATSELVLKF KPFRDSIRRR GLNVSEVVVT TSTMGWFGEA KPERLIKKRP FYLNGSVNTY LRPIEGMTII VNLDQMKVTK FRDRFTSPLP
301: NAKGTEFRIS KLKPPFGPSL QNAVLFQSEG PGFKIDGHTN RWANWEFHMS FDVRAGLVIS LASIFDMDVN KYRQVLYKGH LSEIFVPYMD PSEDWYFRTF
401: FDCGEFGCGQ YAVSLEPYTD CPGNAAFMDG VFASQDGTPI KITNVMCIFE KYAGDIMWRH TEIEIPGLKV RPDVSLVVRM VTTVGNYDYI VDYEFKPSGS
501: IKIGVGLTGV LEVKPVKYVN TSEIKEDDIH GTIVADNTIG VNHDHFVTYR LDLDIDGTDN SFVRSELVTK RTPKSVNTPR KSYWTTKRLK AEELLVVNPS
601: RKTKHGNEVG YRLLHGPASE GPLLAQDDYP QIRAAFTNYN VWITPYNNTE VWASGLYADR SQGDDTLAVW SQRNRKIEKT DIVMWYTVGF HHVPCQEDFP
701: TMPTLFGGFE LRPTNFFEQN PDLKTKPIKL NTTPTCTARN D

Arabidopsis Description

SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.