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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • endoplasmic reticulum 5
  • golgi 5
  • extracellular 6
  • vacuole 4
  • plasma membrane 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX77547 Canola cytosol 13.36 83.19
Bra014912.1-P Field mustard cytosol 13.36 83.19
CDY27138 Canola cytosol 40.62 80.05
Bra038431.1-P Field mustard cytosol 40.62 80.05
AT1G31690.1 Thale cress extracellular 73.01 79.91
CDY53725 Canola cytosol 6.07 76.27
AT1G31710.1 Thale cress extracellular, golgi 70.04 76.21
CDY53724 Canola extracellular 12.42 74.8
CDY56663 Canola extracellular, golgi, vacuole 60.19 71.25
VIT_05s0020g03280.t01 Wine grape extracellular, plasma membrane 54.93 60.39
VIT_05s0020g03260.t01 Wine grape extracellular, vacuole 52.36 58.17
KRG91286 Soybean nucleus 52.63 57.61
KRG91283 Soybean extracellular 50.88 55.85
KRG91282 Soybean extracellular 50.2 55.11
VIT_05s0020g03320.t01 Wine grape extracellular, plasma membrane 49.12 53.85
PGSC0003DMT400044197 Potato extracellular, golgi 47.1 53.36
PGSC0003DMT400044305 Potato extracellular, golgi, vacuole 46.83 52.82
Solyc09g090490.1.1 Tomato vacuole 43.59 51.35
AT4G12280.1 Thale cress cytosol 19.57 48.33
AT4G14940.1 Thale cress extracellular, golgi 42.11 48.0
AT1G62810.1 Thale cress extracellular, plasma membrane 39.95 41.57
AT3G43670.1 Thale cress extracellular, vacuole 37.79 40.76
AT4G12290.1 Thale cress extracellular, plasma membrane 39.95 39.95
AT4G12270.1 Thale cress extracellular, vacuole 20.51 33.04
AT2G42490.1 Thale cress peroxisome 24.43 23.32
Protein Annotations
KEGG:00260+1.4.3.21KEGG:00350+1.4.3.21KEGG:00360+1.4.3.21KEGG:00410+1.4.3.21KEGG:00950+1.4.3.21KEGG:00960+1.4.3.21
Gene3D:2.70.98.20Gene3D:3.10.450.40MapMan:8.5.1ArrayExpress:AT1G31670EnsemblPlantsGene:AT1G31670RefSeq:AT1G31670
TAIR:AT1G31670RefSeq:AT1G31670-TAIR-GEnsemblPlants:AT1G31670.1TAIR:AT1G31670.1Unigene:At.49932InterPro:Cu_amine_oxidase
InterPro:Cu_amine_oxidase_CInterPro:Cu_amine_oxidase_C_sfInterPro:Cu_amine_oxidase_N-regInterPro:Cu_amine_oxidase_N2InterPro:Cu_amine_oxidase_N3GO:GO:0003674
GO:GO:0003824GO:GO:0005102GO:GO:0005179GO:GO:0005488GO:GO:0005507GO:GO:0005515
GO:GO:0005575GO:GO:0005576GO:GO:0006810GO:GO:0007154GO:GO:0007165GO:GO:0007275
GO:GO:0008131GO:GO:0008150GO:GO:0008152GO:GO:0009308GO:GO:0009719GO:GO:0009753
GO:GO:0009987GO:GO:0010469GO:GO:0016491GO:GO:0046872GO:GO:0048038GO:GO:0048046
GO:GO:0048364GO:GO:0052593GO:GO:0052594GO:GO:0052595GO:GO:0052596GO:GO:0055114
GO:GO:1902025GO:GO:2000280InterPro:IPR036460PFAM:PF01179PFAM:PF02727PFAM:PF02728
ScanProsite:PS01164ScanProsite:PS01165PANTHER:PTHR10638PANTHER:PTHR10638:SF36SUPFAM:SSF49998SUPFAM:SSF54416
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00000A76E0SEG:seg::
Description
No Description!
Coordinates
chr1:+:11337536..11341889
Molecular Weight (calculated)
84284.5 Da
IEP (calculated)
7.049
GRAVY (calculated)
-0.323
Length
741 amino acids
Sequence
(BLAST)
001: MVNRDNSIVA LSFFMLFLLV LHLHFETTTA ARKPVRVFGP PSSIEWSPPS PPKDDFEWFE INIYKNIEQT AFRPTGQGPS QGIGHKDPPV FSSVFVIGSL
101: SFIPPPHPFD PLTEIELNLV RNIINERYPI GLEHRFTFQY VGLNEPDKSL VLSWVSSQYH NVKSPPRQAF VIARDHGKTR EIVVDFASQA IVSEKIHVGN
201: GYPMLTIDEQ QATSELVLKF KPFRDSIRRR GLNVSEVVVT TSTMGWFGEA KPERLIKKRP FYLNGSVNTY LRPIEGMTII VNLDQMKVTK FRDRFTSPLP
301: NAKGTEFRIS KLKPPFGPSL QNAVLFQSEG PGFKIDGHTN RWANWEFHMS FDVRAGLVIS LASIFDMDVN KYRQVLYKGH LSEIFVPYMD PSEDWYFRTF
401: FDCGEFGCGQ YAVSLEPYTD CPGNAAFMDG VFASQDGTPI KITNVMCIFE KYAGDIMWRH TEIEIPGLKV RPDVSLVVRM VTTVGNYDYI VDYEFKPSGS
501: IKIGVGLTGV LEVKPVKYVN TSEIKEDDIH GTIVADNTIG VNHDHFVTYR LDLDIDGTDN SFVRSELVTK RTPKSVNTPR KSYWTTKRLK AEELLVVNPS
601: RKTKHGNEVG YRLLHGPASE GPLLAQDDYP QIRAAFTNYN VWITPYNNTE VWASGLYADR SQGDDTLAVW SQRNRKIEKT DIVMWYTVGF HHVPCQEDFP
701: TMPTLFGGFE LRPTNFFEQN PDLKTKPIKL NTTPTCTARN D
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.