CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 1
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77672
CDY14839
CDY21099
CDY21100
CDY22564
CDY33480
CDY35376
CDY47975
CDY50165
CDY50167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42490.1	CDY21099	AT1G13520.1	21798944
AT2G42490.1	CDY21100	AT1G13520.1	21798944
AT2G42490.1	CDY50165	AT1G13520.1	21798944
AT2G42490.1	CDY50167	AT1G13520.1	21798944
AT2G42490.1	CDY14839	AT2G42490.1	21798944
AT2G42490.1	CDY22564	AT2G42490.1	21798944
AT2G42490.1	CDY35376	AT2G42490.1	21798944
AT2G42490.1	CDY47975	AT2G42490.1	21798944
AT2G42490.1	CDX77672	AT5G46570.1	21798944
AT2G42490.1	CDY33480	AT5G46570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35376	Canola	plastid	93.95	94.84
CDY47975	Canola	peroxisome	65.95	91.48
CDY14839	Canola	peroxisome, plastid	65.95	91.48
AT2G42490.1	Thale cress	peroxisome	65.77	91.11
Os04t0476100-01	Rice	peroxisome	41.4	85.91
GSMUA_Achr6P06650_001	Banana	peroxisome	55.07	84.81
GSMUA_Achr10P...	Banana	peroxisome	55.16	83.64
KRH45608	Soybean	mitochondrion	58.79	82.51
KRG99420	Soybean	plastid	58.33	82.07
KRH69629	Soybean	peroxisome	57.02	80.66
Os02t0593100-00	Rice	cytosol	34.88	80.47
TraesCS6B01G236300.4	Wheat	cytosol	48.47	80.03
TraesCS6D01G191300.1	Wheat	peroxisome	55.53	79.28
TraesCS6A01G207600.3	Wheat	peroxisome	55.26	78.88
HORVU6Hr1G053060.2	Barley	peroxisome	54.79	78.85
HORVU2Hr1G082420.6	Barley	cytosol	42.88	78.0
Os04t0136200-00	Rice	cytosol, peroxisome	44.37	77.81
Solyc05g013440.2.1	Tomato	peroxisome, plastid	56.0	77.58
Zm00001d003309_P002	Maize	mitochondrion, peroxisome	55.81	76.92
TraesCS2A01G327600.1	Wheat	golgi	55.16	76.91
TraesCS2D01G335300.1	Wheat	peroxisome, unclear	55.44	76.9
TraesCS2B01G354400.1	Wheat	peroxisome	55.35	76.87
EES12364	Sorghum	peroxisome	55.91	76.85
OQU89852	Sorghum	cytosol	45.4	76.73
GSMUA_Achr6P12170_001	Banana	peroxisome	54.23	72.6
CDY53725	Canola	cytosol	1.77	32.2
CDX77547	Canola	cytosol	3.44	31.09
CDY53724	Canola	extracellular	3.35	29.27
CDY27138	Canola	cytosol	10.23	29.26
CDY27135	Canola	cytosol	14.33	28.47
CDY25701	Canola	cytosol	14.7	27.92
CDY32205	Canola	extracellular, vacuole	16.28	27.09
CDX97351	Canola	extracellular, plasma membrane	18.51	26.78
CDY04405	Canola	cytosol	6.23	26.38
CDY04409	Canola	extracellular, plasma membrane	18.14	26.25
CDX97353	Canola	cytosol	9.95	26.23
CDY50266	Canola	extracellular, golgi	15.81	26.15
CDY54865	Canola	extracellular, golgi	15.72	26.0
CDY56663	Canola	extracellular, golgi, vacuole	14.42	24.76
CDY69801	Canola	cytosol	3.35	22.64

Protein Annotations

KEGG:00260+1.4.3.21	KEGG:00350+1.4.3.21	KEGG:00360+1.4.3.21	KEGG:00410+1.4.3.21	KEGG:00950+1.4.3.21	KEGG:00960+1.4.3.21
Gene3D:2.60.210.10	Gene3D:2.70.98.20	Gene3D:3.10.450.40	MapMan:50.1.4	GO:A0A078GB50	UniProt:A0A078GB50
EnsemblPlants:CDY22564	ProteinID:CDY22564	ProteinID:CDY22564.1	InterPro:Cu_amine_oxidase	InterPro:Cu_amine_oxidase_C	InterPro:Cu_amine_oxidase_C_sf
InterPro:Cu_amine_oxidase_N-reg	InterPro:Cu_amine_oxidase_N3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005507
GO:GO:0005515	GO:GO:0008131	GO:GO:0008150	GO:GO:0008152	GO:GO:0009308	GO:GO:0016491
GO:GO:0046872	GO:GO:0048038	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00019167001	InterPro:IPR002083	InterPro:IPR008974
InterPro:IPR036460	InterPro:MATH/TRAF_dom	PFAM:PF00917	PFAM:PF01179	PFAM:PF02728	PFscan:PS50144
PANTHER:PTHR10638	PANTHER:PTHR10638:SF18	MetaCyc:PWY-5751	SMART:SM00061	SUPFAM:SSF49599	SUPFAM:SSF49998
SUPFAM:SSF54416	InterPro:TRAF-like	UniParc:UPI0004EF4362	SEG:seg	:	:

Description

BnaC03g23740DAmine oxidase [Source:UniProtKB/TrEMBL;Acc:A0A078GB50]

Coordinates

chrLK032132:-:635064..643254

Molecular Weight (calculated)

121203.0 Da

IEP (calculated)

7.148

GRAVY (calculated)

-0.331

Length

1075 amino acids

Sequence
(BLAST)

0001: MASASQKTTP CAHHGASAPP PPKLLSAVES VIRPVDSIPD TAKKPANKGI SVTPRSETKH PLDPLSAAEI SVAVATVRAA GANPEVRDSM RFIEVASVEP
0101: EKHVVALADA YFFPPFQPSL LPRTKAGPVI PMKLPPRRAR LVVYNKTSNE TSVWIVELSS VHAVTRGGHH RGRVVSSQVI PDVQPPMDAE EYAECEAIVK
0201: DFPPFIEAMK RRGIDDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDCPMENGYA RPVEGIYVLV DMQNMVVIEF EDRKFVPLPP PDPLRNYTPG
0301: ESRGGVDRSD VKPLEIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD PNEPHYRKNA FDAGEDGLGK
0401: NAHSLKKGCD CLGFIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFF CTVANYEYGF YWHFYQDGKI EAEVKLTGIL
0501: SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPGEAYNQVV EVNVKVDEPG ENNIHNNAFY AEEKLLRSEA EATRDCDPFS ARHWIVRNTR
0601: TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES DVVLWYVYVF GITHVPRLED
0701: WPVMPVEHIG FTLMPHGFFN CSPAVDVPPN PACELDTKDS EMEKAFRWEI NNFSENKSVM KSDRFSSGGC EWYKTRIIKI FSFLIRNSIF EQMEKAFRWE
0801: INNFSENKSV MKSDRFSSGG CEWYLCVYPK GKIVDDHLSL FLNVVNFRKL LPGWRRQASF SFVVLNQSGK VLHRTVEKSR LFCAEAPSWG NSKILPLTKL
0901: QEDGVLENNK LIIEVNIKVT KVADEGKSTE NEIVVVHGFH VLNSQVVSVS NMFVKHPDVA VDIRSDIREV KTAYMNILLG LVQTLDKPPQ SLSETELSNA
1001: DSELSELTDA GFKLDWLKSK LEEVSLKRKE PSSHLKVELD KEKIESTAAP APRVSPFECI VVLIKKFFLA CFAGH

Best Arabidopsis Sequence Match ( AT2G42490.1 )
(BLAST)

001: MASASKKTSA CPHHGGSLPP PKLVSAAPDT VAVWSDADDQ RASKVSLESV IRPVDSFPDN TAKKPANKGI SVMPRTETKH PLDPLSAAEI SVAVATVRAA
101: GANPEVRDGM RFIEVASVEP DKQVVALADA YFFPPFQPSL LPRTKSGPVI PMKLPPRRAR LVVYNQKSNE TSVWIVALSE VHAVTRGGHH RGRVVSSQVI
201: PDVQPPMDAA EYAECEAIVK DFPPFIEAMK RRGIEDMDLV MVDPWCVGYH SEADAPSRRL AKPLIYCRTD SDSPMENGYA RPVEGIYVLV DMQNMVVIEF
301: EDRKFVPLPP PDPLRNYTPG ESRGGVDRSD VKPLQIIQPE GPSFRVRGYF VEWQKWNFRI GFTPREGLVI HSVAYVDGSR GRRPVAHRLS FVEMVVPYGD
401: PNEPHYRKNA FDAGEDGLGK NAHSLKKGCD CLGSIKYFDA HFTNFTGGVE TIENCVCLHE EDHGILWKHQ DWRTGLAEVR RSRRLTVSFL CTVANYEYGF
501: YWHFYQDGKI EAEVKLTGIL SLGALQPGET RKYGTTIAPG LYAPVHQHFF IARMDMSVDC KPAEAFNQVV EVNVRVDERG ENNVHNNAFY AEEKLLKSEA
601: VAMRDCDPLS ARHWIVRNTR TVNRTGQLTG YKLVPGSNCL PLARPEAKFL RRAAFLKHNL WVTRYAPDEK FPGGEFPNQN PRAGEGLATW VKQNRSLEES
701: DVVLWYVFGI THVPRLEDWP VMPVEHIGFT LMPHGFFNCS PAVDVPPNPC ELETKESEVK EVVAPKALQT GLLSKL

Arabidopsis Description

Amine oxidase [Source:UniProtKB/TrEMBL;Acc:Q8L866]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.