CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79848
CDX79851
CDX89437
CDY03368
CDY15651
CDY50821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	CDX79848	AT2G42790.1	21798944
AT1G13520.1	CDX79851	AT2G42790.1	21798944
AT1G13520.1	CDY15651	AT2G42790.1	21798944
AT1G13520.1	CDY50821	AT2G42790.1	21798944
AT1G13520.1	CDX89437	AT4G25200.1	21798944
AT1G13520.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50167	Canola	cytosol	92.71	91.99
Bra016728.1-P	Field mustard	cytosol	91.15	90.67
CDY21100	Canola	cytosol	89.84	89.38
CDY50165	Canola	cytosol	83.85	84.07
AT1G13520.1	Thale cress	cytosol	78.12	77.52
CDY16094	Canola	cytosol	69.01	69.74
CDY26654	Canola	cytosol	68.75	69.47
CDY26653	Canola	cytosol	61.72	66.57
CDY30029	Canola	cytosol	62.76	63.25
CDX98103	Canola	cytosol	60.42	62.7
CDY16092	Canola	cytosol	46.09	62.32
CDY21101	Canola	cytosol, mitochondrion	59.64	59.02
CDY50164	Canola	cytosol	59.64	59.02
CDY26655	Canola	cytosol	54.17	53.06
CDY16095	Canola	cytosol	53.65	52.42
CDY16093	Canola	cytosol	43.23	48.26
VIT_01s0011g02320.t01	Wine grape	cytosol	44.27	43.48
PGSC0003DMT400019462	Potato	cytosol	43.75	42.53
KRH71102	Soybean	cytosol	42.19	42.41
KRH71091	Soybean	cytosol	42.97	41.67
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	35.94	40.95
PGSC0003DMT400019458	Potato	cytosol	35.94	40.83
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	42.19	40.81
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	41.67	40.51
Solyc05g010470.2.1	Tomato	cytosol	32.81	39.87
PGSC0003DMT400059315	Potato	cytosol	28.12	38.71
GSMUA_Achr5P27360_001	Banana	mitochondrion	38.28	38.28
GSMUA_Achr3P06220_001	Banana	cytosol	38.02	38.12
GSMUA_Achr5P27350_001	Banana	mitochondrion	38.02	37.63
CDY15029	Canola	cytosol, mitochondrion	40.62	36.79
GSMUA_Achr9P18410_001	Banana	cytosol	36.2	36.39
Os08t0413200-00	Rice	cytosol	39.06	35.63
Os08t0413500-00	Rice	cytosol, plasma membrane	37.76	35.63
Zm00001d050302_P001	Maize	cytosol, plastid	34.38	35.2
Os08t0412700-01	Rice	cytosol, plasma membrane	34.38	34.92
OQU80420	Sorghum	cytosol	33.59	34.77
Os08t0413100-00	Rice	cytosol, plasma membrane	37.5	34.7
CDY48822	Canola	cytosol	18.23	33.33
TraesCS7D01G441700.1	Wheat	cytosol	39.06	32.89
CDY26357	Canola	mitochondrion	40.1	32.7
TraesCS4D01G191600.1	Wheat	cytosol	32.81	32.06
EES09009	Sorghum	cytosol	36.98	32.05
CDY47587	Canola	nucleus	15.1	31.69
Os08t0412800-01	Rice	plasma membrane	31.77	31.69
TraesCS4A01G113900.1	Wheat	cytosol	32.29	31.63
TraesCS4B01G190200.1	Wheat	cytosol	32.55	31.57

Protein Annotations

EnsemblPlants:CDY21099	EnsemblPlantsGene:GSBRNA2T00015276001	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2	PFAM:PF06880
ProteinID:CDY21099	ProteinID:CDY21099.1	SEG:seg	UniParc:UPI0004EE9FD3	UniProt:A0A078G6R6	MapMan:35.2

Description

BnaA08g24260DBnaA08g24260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6R6]

Coordinates

chrLK032115:-:665932..667931

Molecular Weight (calculated)

43863.7 Da

IEP (calculated)

7.659

GRAVY (calculated)

-0.561

Length

384 amino acids

Sequence
(BLAST)

001: MYVTRHLSEC QRYYSNLTQS EGPNSGVLVI QDEESKPTCC FGSCYDAKLK GLPFPQNAEL AVIYSKGNGQ SKHTVSYPVL FIPVPGQPLS LNRYYVIKRR
101: GKHSGGASAS AKEEDRVPCC FCFSYVPEAK PQEADPYDIY QQFEIHQRPA SSGRYTATSV APNGIPPKFL KRKYWTVNYS NSQDFGLTDD AKGISAELRS
201: ELPKDVNTSV VVGKWYVPFI FVKEGDAKGQ IKNSTYYRMT LKQRWEEVYS CSYNEEASEV VVDVEVETEV VKLDGEVTNL RETRADGIVL FSVLRDERQD
301: MKIGLGSVVV ERIKWEEERF GWLNRGDEVR SRIKRSERFE GGSSQWKSYK CYVLVESFEL KRTDGSLVLT YEFTHVDKLK SKWV

Best Arabidopsis Sequence Match ( AT1G13520.1 )
(BLAST)

001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD

Arabidopsis Description

At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.