Factsheet for GSMUA_Achr9P18410_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	GSMUA_Achr10P...	AT2G42790.1	21798944
AT1G13520.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06220_001	Banana	cytosol	48.95	48.83
GSMUA_Achr5P27360_001	Banana	mitochondrion	48.69	48.44
GSMUA_Achr5P27350_001	Banana	mitochondrion	48.95	48.2
VIT_01s0011g02320.t01	Wine grape	cytosol	43.46	42.46
Os08t0412700-01	Rice	cytosol, plasma membrane	40.31	40.74
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	41.62	40.25
Zm00001d050302_P001	Maize	cytosol, plastid	39.27	40.0
OQU80420	Sorghum	cytosol	38.74	39.89
KRH71102	Soybean	cytosol	38.74	38.74
PGSC0003DMT400019458	Potato	cytosol	34.03	38.46
TraesCS4A01G113900.1	Wheat	cytosol	39.27	38.27
Os08t0412800-01	Rice	plasma membrane	37.96	37.66
TraesCS4D01G191600.1	Wheat	cytosol	38.48	37.4
Bra026901.1-P	Field mustard	cytosol	37.17	37.37
Solyc05g010470.2.1	Tomato	cytosol	30.89	37.34
Os08t0413100-00	Rice	cytosol, plasma membrane	40.31	37.11
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	38.48	37.03
TraesCS4B01G190200.1	Wheat	cytosol	38.22	36.87
CDY16094	Canola	cytosol	36.65	36.84
KRH71091	Soybean	cytosol	37.96	36.62
CDY26654	Canola	cytosol	36.39	36.58
CDY21100	Canola	cytosol	36.91	36.53
PGSC0003DMT400019462	Potato	cytosol	37.7	36.46
AT1G13490.2	Thale cress	cytosol	36.39	36.39
Os08t0413500-00	Rice	cytosol, plasma membrane	38.74	36.36
PGSC0003DMT400059315	Potato	cytosol	26.44	36.2
CDY21099	Canola	cytosol	36.39	36.2
AT1G13530.1	Thale cress	cytosol	36.39	36.1
CDY50165	Canola	cytosol	35.86	35.77
Bra016728.1-P	Field mustard	cytosol	36.13	35.75
KRG93807	Soybean	mitochondrion, nucleus	37.96	35.71
CDX98103	Canola	cytosol	34.29	35.41
Bra026902.1-P	Field mustard	cytosol	35.08	35.26
CDY26653	Canola	cytosol	32.72	35.11
Os08t0413200-00	Rice	cytosol	38.48	34.92
CDY30029	Canola	cytosol	34.82	34.91
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	30.63	34.72
AT1G13500.1	Thale cress	cytosol	35.08	34.72
CDY50167	Canola	cytosol	35.08	34.63
AT1G13520.1	Thale cress	cytosol	35.08	34.63
CDY50164	Canola	cytosol	35.08	34.54
AT1G13510.1	Thale cress	cytosol	34.29	34.47
CDY15029	Canola	cytosol, mitochondrion	38.22	34.43
AT1G13480.1	Thale cress	nucleus	34.82	34.37
AT1G13470.1	Thale cress	cytosol	34.03	34.3
AT1G61600.1	Thale cress	cytosol	37.7	34.2
CDY16092	Canola	cytosol	25.39	34.15
AT1G13540.1	Thale cress	cytosol	34.03	34.12
Bra019719.1-P	Field mustard	cytosol	34.03	34.12
CDY21101	Canola	cytosol, mitochondrion	34.55	34.02
CDY48822	Canola	cytosol	18.59	33.81
Bra016727.1-P	Field mustard	cytosol	34.29	33.76
EES09009	Sorghum	cytosol	38.48	33.18
AT1G13550.1	Thale cress	cytosol	33.25	32.73
PGSC0003DMT400026205	Potato	mitochondrion	34.03	32.66
Solyc02g089650.2.1	Tomato	mitochondrion	33.77	32.41
Bra038594.1-P	Field mustard	nucleus	38.48	31.21
CDY47587	Canola	nucleus	14.92	31.15
CDY26357	Canola	mitochondrion	38.22	31.0
TraesCS7D01G441700.1	Wheat	cytosol	36.91	30.92
CDY16095	Canola	cytosol	30.63	29.77
Bra026900.1-P	Field mustard	cytosol	30.37	29.59
CDY26655	Canola	cytosol	30.37	29.59
CDY16093	Canola	cytosol	25.92	28.78

Protein Annotations

EnsemblPlants:GSMUA_Achr9P18410_001	EnsemblPlants:GSMUA_Achr9T18410_001	EnsemblPlantsGene:GSMUA_Achr9G18410_001	InterPro:DUF1262	InterPro:IPR017877	InterPro:Myb-like_dom
PANTHER:PTHR31050	PFAM:PF06880	PFscan:PS50090	UniParc:UPI00029661CB	UniProt:M0U1E8	MapMan:35.2

Description

Putative conserved hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G18410_001]

Coordinates

chr9:-:13003107..13004331

Molecular Weight (calculated)

43501.3 Da

IEP (calculated)

8.778

GRAVY (calculated)

-0.441

Length

382 amino acids

Sequence
(BLAST)

001: MYAAKTLSRW SLDQPKPGSN SGYIVLKDEE SEPESACCFG CPEETRIRNL PFPQDRILTI KYSPLKGENG SNKATVCFIP AVGHPLSSNR YYVIVAKGRK
101: RGKVYTCSKE DIACCSCHGG VKDAKLRAFD HRNVYQVMEI KDDGNGKFTA KSVAPDGHPP SLLGREHWKL YASKPKHYAL REAWGLDAGL RACLPDLNFP
201: IGAADGPKIT VGRWYCPFMF VKEACRLRDQ MKRSMFYEIS LEQFWQKVYA CENHSGHDKV VEVNALFGSL LVMMDGGKEV VQDRTVHGDD GMVWFKPLDS
301: RAKGIGLSLA MWESIKWEQG RGGWIADEEE RMVRLEQYEG MNRWKKFACY VLVERFVVKR IDGSLVLTFD FRHSIKVRSK WD

Best Arabidopsis Sequence Match ( AT1G61600.1 )
(BLAST)

001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETE DTFCFGMCTR TKIEKLPLPQ DKILSVVHLD SSGNRETSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E

Arabidopsis Description

DUF1262 family protein (DUF1262) [Source:UniProtKB/TrEMBL;Acc:Q9SY90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.