Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G13520.1 | Thale cress | cytosol | 70.28 | 70.28 |
| AT1G13470.1 | Thale cress | cytosol | 63.57 | 64.91 |
| AT1G13490.2 | Thale cress | cytosol | 62.79 | 63.61 |
| AT1G13500.1 | Thale cress | cytosol | 63.05 | 63.21 |
| AT1G13530.1 | Thale cress | cytosol | 62.53 | 62.86 |
| AT1G13540.1 | Thale cress | cytosol | 58.91 | 59.84 |
| AT1G13510.1 | Thale cress | cytosol | 57.62 | 58.68 |
| AT1G13550.1 | Thale cress | cytosol | 55.56 | 55.41 |
| PGSC0003DMT400019462 | Potato | cytosol | 43.93 | 43.04 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 37.47 | 43.03 |
| KRH71091 | Soybean | cytosol | 43.93 | 42.93 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 42.89 | 42.46 |
| PGSC0003DMT400019458 | Potato | cytosol | 36.69 | 42.01 |
| KRH71102 | Soybean | cytosol | 40.57 | 41.1 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 41.34 | 40.3 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 40.57 | 39.75 |
| Solyc05g010470.2.1 | Tomato | cytosol | 32.04 | 39.24 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 39.28 | 39.18 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 38.76 | 39.06 |
| PGSC0003DMT400059315 | Potato | cytosol | 26.87 | 37.28 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 36.69 | 37.08 |
| AT1G61600.1 | Thale cress | cytosol | 39.28 | 36.1 |
| Os08t0413200-00 | Rice | cytosol | 39.02 | 35.87 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 34.11 | 34.92 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 34.37 | 34.82 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 33.33 | 34.4 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 36.18 | 34.4 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 36.43 | 33.98 |
| OQU80420 | Sorghum | cytosol | 31.52 | 32.88 |
| EES09009 | Sorghum | cytosol | 36.69 | 32.05 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 32.3 | 31.57 |
| Os08t0412800-01 | Rice | plasma membrane | 31.27 | 31.43 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 31.78 | 31.3 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 31.52 | 31.12 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 36.18 | 30.7 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837908 | ProteinID:AEE29024.1 | EMBL:AK221494 | ArrayExpress:AT1G13480 | EnsemblPlantsGene:AT1G13480 |
| RefSeq:AT1G13480 | TAIR:AT1G13480 | RefSeq:AT1G13480-TAIR-G | EnsemblPlants:AT1G13480.1 | TAIR:AT1G13480.1 | Unigene:At.51171 |
| EMBL:BT023448 | InterPro:DUF1262 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 | RefSeq:NP_172805.1 |
| PFAM:PF06880 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | UniProt:Q56Y29 | UniParc:UPI0000162D60 | SEG:seg |
Description
At1g13480 [Source:UniProtKB/TrEMBL;Acc:Q56Y29]
Coordinates
chr1:-:4622550..4624081
Molecular Weight (calculated)
44534.2 Da
IEP (calculated)
5.252
GRAVY (calculated)
-0.622
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRRLSEY QKKPSELKLL PPEGPNSGIM VIQDEESQAT CCFGSCYEGR LKGLPFPQNV KLNAAYTSGG GEHQTTHLTP VVFIPVLDQP LSSNLYYVLQ
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.