Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_06s0080g00770.t01 | |
VIT_12s0142g00610.t01 | |
VIT_16s0022g00510.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G13520.1 | VIT_06s0080g00770.t01 | AT2G42790.1 | 21798944 |
AT1G13520.1 | VIT_12s0142g00610.t01 | AT2G42790.1 | 21798944 |
AT1G13520.1 | VIT_16s0022g00510.t01 | AT4G25200.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 85.42 | 84.56 |
PGSC0003DMT400019462 | Potato | cytosol | 56.78 | 56.2 |
KRH71102 | Soybean | cytosol | 53.96 | 55.24 |
PGSC0003DMT400019458 | Potato | cytosol | 46.8 | 54.14 |
Solyc05g010470.2.1 | Tomato | cytosol | 42.97 | 53.16 |
KRH71091 | Soybean | cytosol | 52.94 | 52.27 |
Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 52.94 | 52.14 |
PGSC0003DMT400059315 | Potato | cytosol | 36.32 | 50.9 |
KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 43.48 | 50.45 |
Bra026901.1-P | Field mustard | cytosol | 45.78 | 47.11 |
GSMUA_Achr5P27350_001 | Banana | mitochondrion | 46.29 | 46.65 |
AT1G13470.1 | Thale cress | cytosol | 45.01 | 46.44 |
CDY26654 | Canola | cytosol | 45.01 | 46.32 |
GSMUA_Achr5P27360_001 | Banana | mitochondrion | 45.27 | 46.09 |
CDY26653 | Canola | cytosol | 41.94 | 46.07 |
CDY16094 | Canola | cytosol | 44.76 | 46.05 |
AT1G13510.1 | Thale cress | cytosol | 44.76 | 46.05 |
Bra026902.1-P | Field mustard | cytosol | 44.5 | 45.79 |
AT1G13530.1 | Thale cress | cytosol | 45.01 | 45.71 |
CDX98103 | Canola | cytosol | 43.22 | 45.68 |
GSMUA_Achr3P06220_001 | Banana | cytosol | 44.5 | 45.43 |
CDY50165 | Canola | cytosol | 44.5 | 45.43 |
Bra019719.1-P | Field mustard | cytosol | 43.99 | 45.14 |
Bra016728.1-P | Field mustard | cytosol | 44.5 | 45.08 |
CDY21100 | Canola | cytosol | 44.5 | 45.08 |
AT1G13490.2 | Thale cress | cytosol | 43.99 | 45.03 |
CDY30029 | Canola | cytosol | 43.73 | 44.88 |
AT1G13540.1 | Thale cress | cytosol | 43.48 | 44.62 |
AT1G13520.1 | Thale cress | cytosol | 43.99 | 44.44 |
CDY21099 | Canola | cytosol | 43.48 | 44.27 |
CDY50164 | Canola | cytosol | 43.73 | 44.07 |
Bra016727.1-P | Field mustard | cytosol | 43.73 | 44.07 |
AT1G13500.1 | Thale cress | cytosol | 43.48 | 44.04 |
CDY21101 | Canola | cytosol, mitochondrion | 43.22 | 43.56 |
GSMUA_Achr9P18410_001 | Banana | cytosol | 42.46 | 43.46 |
AT1G13480.1 | Thale cress | nucleus | 42.46 | 42.89 |
CDY16092 | Canola | cytosol | 30.69 | 42.25 |
AT1G13550.1 | Thale cress | cytosol | 41.43 | 41.75 |
CDY50167 | Canola | cytosol | 41.18 | 41.6 |
Zm00001d050302_P001 | Maize | cytosol, plastid | 38.87 | 40.53 |
CDY16095 | Canola | cytosol | 39.9 | 39.69 |
CDY26655 | Canola | cytosol | 39.64 | 39.54 |
Bra026900.1-P | Field mustard | cytosol | 39.64 | 39.54 |
Os08t0412700-01 | Rice | cytosol, plasma membrane | 37.6 | 38.89 |
Os08t0413100-00 | Rice | cytosol, plasma membrane | 41.18 | 38.8 |
Os08t0413500-00 | Rice | cytosol, plasma membrane | 39.9 | 38.33 |
OQU80420 | Sorghum | cytosol | 36.32 | 38.27 |
Os08t0413200-00 | Rice | cytosol | 39.9 | 37.05 |
CDY16093 | Canola | cytosol | 32.23 | 36.63 |
Os08t0412800-01 | Rice | plasma membrane | 35.55 | 36.1 |
TraesCS4A01G113900.1 | Wheat | cytosol | 35.81 | 35.71 |
TraesCS4D01G191600.1 | Wheat | cytosol | 35.81 | 35.62 |
TraesCS4B01G190200.1 | Wheat | cytosol | 36.06 | 35.61 |
EES09009 | Sorghum | cytosol | 38.11 | 33.63 |
TraesCS7D01G441700.1 | Wheat | cytosol | 37.6 | 32.24 |
Protein Annotations
ArrayExpress:VIT_01s0011g02320 | EMBL:FN595752 | EnsemblPlants:VIT_01s0011g02320.t01 | EnsemblPlantsGene:VIT_01s0011g02320 | EntrezGene:100266416 | EntrezGene:LOC100266416 |
InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PFAM:PF06880 | ProteinID:CBI27123 | ProteinID:CBI27123.3 |
RefSeq:XP_003631233 | RefSeq:XP_003631233.1 | SEG:seg | TIGR:TC54771 | UniParc:UPI0001BE2B98 | UniProt:D7T9F2 |
wikigene:100266416 | wikigene:LOC100266416 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1:-:2095422..2096890
Molecular Weight (calculated)
44269.3 Da
IEP (calculated)
6.254
GRAVY (calculated)
-0.475
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRPLSLY RKSPEALSLP PPEGPNSGYL ILQDEESETF CCFGLCKESD IWDLPFPQNK NLTVRYSTGS GESSNTSHDE VFFIPVLNQP LSLNRYYAIK
101: RHGRHKGVAH ASSREDDMGT CCFCNVVKDV KPRPLDPQDI YQQFEISLVE GACTSKGSFT AKSIAPDGFP PNFLRREGWN LSTSTPRNFE LGEAAGLDPS
201: LRARLPDFNF PLHSKSSEPV VVGKWYCPFM FVKEGELKDQ AKRSVYYEMT LEQKWEQIFA CENSYNEGNN TVAVDVVVQG EVVAVAAGET VHDERNVVDG
301: VMWFRSSSGA SVGLRLEIIE RMKWEQVRAG WDGEKKKEMR VERAEEYGGT GGWRKFGCYV LVETFVLKRI DGSLVLSHGF KHTHQIKCRW E
101: RHGRHKGVAH ASSREDDMGT CCFCNVVKDV KPRPLDPQDI YQQFEISLVE GACTSKGSFT AKSIAPDGFP PNFLRREGWN LSTSTPRNFE LGEAAGLDPS
201: LRARLPDFNF PLHSKSSEPV VVGKWYCPFM FVKEGELKDQ AKRSVYYEMT LEQKWEQIFA CENSYNEGNN TVAVDVVVQG EVVAVAAGET VHDERNVVDG
301: VMWFRSSSGA SVGLRLEIIE RMKWEQVRAG WDGEKKKEMR VERAEEYGGT GGWRKFGCYV LVETFVLKRI DGSLVLSHGF KHTHQIKCRW E
001: MYVTKRLSEY QRNPSELTFL PTEGPNSGVL VIQDEESQPT CCFGKCFGCD LNGLPFPQNT RVTVKYQIGH GDDRIVLLDS VAFIPVLHQP PSSNLYYVIR
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD
Arabidopsis Description
Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13530]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.