Factsheet for Bra019719.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98103	Canola	cytosol	93.96	96.76
CDY30029	Canola	cytosol	95.28	95.28
AT1G13530.1	Thale cress	cytosol	80.31	79.48
AT1G13500.1	Thale cress	cytosol	77.17	76.17
AT1G13490.2	Thale cress	cytosol	75.33	75.13
Bra016728.1-P	Field mustard	cytosol	63.78	62.95
Bra026901.1-P	Field mustard	cytosol	61.94	62.11
Bra026902.1-P	Field mustard	cytosol	61.42	61.58
Bra016727.1-P	Field mustard	cytosol	55.91	54.9
Bra026900.1-P	Field mustard	cytosol	50.39	48.98
PGSC0003DMT400019462	Potato	cytosol	45.67	44.05
VIT_01s0011g02320.t01	Wine grape	cytosol	45.14	43.99
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	43.83	42.28
KRH71091	Soybean	cytosol	43.31	41.67
KRH71102	Soybean	cytosol	41.47	41.36
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	36.22	40.95
PGSC0003DMT400019458	Potato	cytosol	36.22	40.83
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	42.26	40.55
Solyc05g010470.2.1	Tomato	cytosol	33.07	39.87
PGSC0003DMT400059315	Potato	cytosol	29.13	39.78
GSMUA_Achr5P27360_001	Banana	mitochondrion	38.85	38.54
GSMUA_Achr5P27350_001	Banana	mitochondrion	38.85	38.14
Os08t0413100-00	Rice	cytosol, plasma membrane	39.63	36.39
Os08t0413500-00	Rice	cytosol, plasma membrane	38.85	36.36
GSMUA_Achr3P06220_001	Banana	cytosol	36.22	36.03
Os08t0413200-00	Rice	cytosol	39.63	35.87
GSMUA_Achr9P18410_001	Banana	cytosol	34.12	34.03
Zm00001d050302_P001	Maize	cytosol, plastid	33.07	33.6
EES09009	Sorghum	cytosol	38.58	33.18
OQU80420	Sorghum	cytosol	32.28	33.15
Os08t0412700-01	Rice	cytosol, plasma membrane	32.55	32.8
Os08t0412800-01	Rice	plasma membrane	32.81	32.47
Bra038594.1-P	Field mustard	nucleus	38.32	31.0
TraesCS7D01G441700.1	Wheat	cytosol	37.01	30.92
TraesCS4A01G113900.1	Wheat	cytosol	30.71	29.85
TraesCS4D01G191600.1	Wheat	cytosol	30.71	29.77
TraesCS4B01G190200.1	Wheat	cytosol	30.71	29.55

Protein Annotations

EnsemblPlants:Bra019719.1	EnsemblPlants:Bra019719.1-P	EnsemblPlantsGene:Bra019719	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2
PFAM:PF06880	SEG:seg	UniParc:UPI000253ED85	UniProt:M4DT76	MapMan:35.2	:

Description

AT1G13530 (E=3e-181) | unknown protein

Coordinates

chrA06:-:4789383..4790668

Molecular Weight (calculated)

43706.7 Da

IEP (calculated)

6.031

GRAVY (calculated)

-0.471

Length

381 amino acids

Sequence
(BLAST)

001: MYVTKRLTEY QRNPSELTLQ AEGPNSGVLV IQDEESQPKC CFGKCFDCDL NGLPFPQNAR VTVKYQIGSG DDRIVLLDSV AFVPVLHQPL SSNLYYVIRR
101: SGKHTGEACV SAREGDRAPC CFCFSYIPNA TPRPLDPYDT YHQFEIHQRG SSTRKFFATS VASDGIPPRF LRRKGWTVPF SSSEDFGLVD DAKGVVDAKL
201: RYELPDFDKS VVVGKWYVPF LFVKEGDAKD QMRRSMYYSM TLHQRFEEVF LCENVEDKQF EAVVDVEVET EVVKLGGGEI AREAKGMDSD KVVWFSVSGT
301: EEKIGLGSVV LEQMKWEEER FGWSKIRSNI KRSERFEDGG PYWKSYRCYV LVESFELRRN DGSLVLTYEF KHVDKLKSKW N

Best Arabidopsis Sequence Match ( AT1G13530.1 )
(BLAST)

001: MYVTKRLSEY QRNPSELTFL PTEGPNSGVL VIQDEESQPT CCFGKCFGCD LNGLPFPQNT RVTVKYQIGH GDDRIVLLDS VAFIPVLHQP PSSNLYYVIR
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD

Arabidopsis Description

Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13530]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.