Factsheet for GSMUA_Achr5P27350_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
endoplasmic reticulum 1
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	GSMUA_Achr10P...	AT2G42790.1	21798944
AT1G13520.1	GSMUA_Achr10P...	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27360_001	Banana	mitochondrion	93.04	94.01
GSMUA_Achr3P06220_001	Banana	cytosol	58.25	59.01
Zm00001d050302_P001	Maize	cytosol, plastid	47.68	49.33
GSMUA_Achr9P18410_001	Banana	cytosol	48.2	48.95
Os08t0412700-01	Rice	cytosol, plasma membrane	47.16	48.41
OQU80420	Sorghum	cytosol	44.33	46.36
VIT_01s0011g02320.t01	Wine grape	cytosol	46.65	46.29
TraesCS4A01G113900.1	Wheat	cytosol	46.13	45.66
TraesCS4D01G191600.1	Wheat	cytosol	46.13	45.55
TraesCS4B01G190200.1	Wheat	cytosol	46.13	45.2
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	44.85	44.05
KRH71102	Soybean	cytosol	43.04	43.72
Solyc05g010470.2.1	Tomato	cytosol	34.54	42.41
Os08t0413100-00	Rice	cytosol, plasma membrane	45.1	42.17
PGSC0003DMT400019458	Potato	cytosol	36.34	41.72
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	42.27	41.31
Os08t0412800-01	Rice	plasma membrane	40.98	41.3
PGSC0003DMT400019462	Potato	cytosol	42.01	41.27
KRH71091	Soybean	cytosol	41.49	40.66
Os08t0413200-00	Rice	cytosol	44.07	40.62
Os08t0413500-00	Rice	cytosol, plasma membrane	42.01	40.05
PGSC0003DMT400059315	Potato	cytosol	28.61	39.78
CDY16094	Canola	cytosol	38.92	39.74
CDX98103	Canola	cytosol	37.89	39.73
AT1G13480.1	Thale cress	nucleus	39.18	39.28
CDY26654	Canola	cytosol	38.4	39.21
Bra026901.1-P	Field mustard	cytosol	38.4	39.21
CDY30029	Canola	cytosol	38.4	39.11
Bra019719.1-P	Field mustard	cytosol	38.14	38.85
AT1G13470.1	Thale cress	cytosol	37.89	38.79
CDY21100	Canola	cytosol	38.14	38.34
Bra026902.1-P	Field mustard	cytosol	37.37	38.16
CDY21099	Canola	cytosol	37.63	38.02
AT1G13520.1	Thale cress	cytosol	37.89	37.98
AT1G13490.2	Thale cress	cytosol	37.37	37.96
AT1G13530.1	Thale cress	cytosol	37.63	37.92
CDY50165	Canola	cytosol	37.37	37.86
PGSC0003DMT400026205	Potato	mitochondrion	38.66	37.69
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	32.73	37.69
AT1G13510.1	Thale cress	cytosol	36.86	37.63
CDY50164	Canola	cytosol	37.63	37.63
AT1G13500.1	Thale cress	cytosol	37.37	37.56
AT1G13540.1	Thale cress	cytosol	36.86	37.53
Solyc02g089650.2.1	Tomato	mitochondrion	38.4	37.44
CDY21101	Canola	cytosol, mitochondrion	37.37	37.37
CDY26653	Canola	cytosol	34.28	37.36
Bra016728.1-P	Field mustard	cytosol	37.11	37.31
CDY50167	Canola	cytosol	37.11	37.21
Bra016727.1-P	Field mustard	cytosol	37.11	37.11
EES09009	Sorghum	cytosol	42.27	37.02
CDY16092	Canola	cytosol	27.06	36.97
TraesCS7D01G441700.1	Wheat	cytosol	42.78	36.4
KRG93807	Soybean	mitochondrion, nucleus	37.63	35.96
CDY15029	Canola	cytosol, mitochondrion	38.66	35.38
AT1G13550.1	Thale cress	cytosol	34.79	34.79
AT1G61600.1	Thale cress	cytosol	37.63	34.68
CDY16095	Canola	cytosol	32.73	32.32
Bra026900.1-P	Field mustard	cytosol	32.47	32.14
CDY26655	Canola	cytosol	32.47	32.14
CDY26357	Canola	mitochondrion	37.89	31.21
CDY16093	Canola	cytosol	27.58	31.1
Bra038594.1-P	Field mustard	nucleus	37.63	31.0
CDY47587	Canola	nucleus	14.18	30.05
CDY48822	Canola	cytosol	16.24	30.0

Protein Annotations

EnsemblPlants:GSMUA_Achr5P27350_001	EnsemblPlants:GSMUA_Achr5T27350_001	EnsemblPlantsGene:GSMUA_Achr5G27350_001	InterPro:DUF1262	PANTHER:PTHR31050	PFAM:PF06880
SEG:seg	UniParc:UPI00029660E6	UniProt:M0T260	MapMan:35.2	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G27350_001]

Coordinates

chr5:-:27879190..27880448

Molecular Weight (calculated)

43523.6 Da

IEP (calculated)

7.805

GRAVY (calculated)

-0.411

Length

388 amino acids

Sequence
(BLAST)

001: MYTTRPLSVF KNSAGAAAIQ PPPPAGPNSG YLLLQDEGAE PNPSCCWGLC EDTRVRELPF PQNRILTITY TEHNGQSSTT HRFPALFIPV LYKSFSSNHY
101: YVIVAKGKKK GKAYTCSLEE DMTTCCFCQC VNDVKPREFD HRDIYQQVEI VCKRGRFTAQ SVAPDGFAPW PLRRKDWRLY ASKPTDFDLT DAWGLDKALR
201: ARTPALELPI SGAGGAGLVV GRWYAPCVFV KEGDSLRRQM ERSAFYDITL EQRWEQVFAC ENLYGDRRTV EVKATVRAEG AVLGGVEATR DGAGGQDGVV
301: WFKPLDLEGE RVGLSSPVWE RMRWEQGRGG WVGGDVKVER SEEYGGVGPW KRFGCYVLVE RFVVSRMDGS SALIVDFKHT GTIQTKWE

Best Arabidopsis Sequence Match ( AT1G13480.1 )
(BLAST)

001: MYVTRRLSEY QKKPSELKLL PPEGPNSGIM VIQDEESQAT CCFGSCYEGR LKGLPFPQNV KLNAAYTSGG GEHQTTHLTP VVFIPVLDQP LSSNLYYVLQ
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD

Arabidopsis Description

At1g13480 [Source:UniProtKB/TrEMBL;Acc:Q56Y29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.