Factsheet for PGSC0003DMT400026205

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089650.2.1	Tomato	mitochondrion	94.97	94.97
CDY15029	Canola	cytosol, mitochondrion	42.71	40.09
KRG93807	Soybean	mitochondrion, nucleus	40.7	39.9
AT1G61600.1	Thale cress	cytosol	41.46	39.19
GSMUA_Achr5P27360_001	Banana	mitochondrion	37.69	39.06
PGSC0003DMT400019462	Potato	cytosol	38.44	38.73
GSMUA_Achr5P27350_001	Banana	mitochondrion	37.69	38.66
PGSC0003DMT400019458	Potato	cytosol	32.66	38.46
GSMUA_Achr3P06220_001	Banana	cytosol	36.18	37.6
PGSC0003DMT400059315	Potato	cytosol	26.13	37.28
CDY26357	Canola	mitochondrion	42.21	35.67
Bra038594.1-P	Field mustard	nucleus	41.96	35.46
Zm00001d050302_P001	Maize	cytosol, plastid	33.17	35.2
GSMUA_Achr9P18410_001	Banana	cytosol	32.66	34.03
Os08t0413100-00	Rice	cytosol, plasma membrane	35.43	33.98
CDY48822	Canola	cytosol	17.84	33.81
OQU80420	Sorghum	cytosol	31.41	33.69
Os08t0413500-00	Rice	cytosol, plasma membrane	34.42	33.66
Os08t0413200-00	Rice	cytosol	35.43	33.49
Os08t0412700-01	Rice	cytosol, plasma membrane	31.41	33.07
TraesCS4A01G113900.1	Wheat	cytosol	31.16	31.63
TraesCS4D01G191600.1	Wheat	cytosol	30.9	31.3
EES09009	Sorghum	cytosol	34.67	31.15
TraesCS4B01G190200.1	Wheat	cytosol	30.65	30.81
Os08t0412800-01	Rice	plasma membrane	28.14	29.09
CDY47587	Canola	nucleus	13.32	28.96
TraesCS7D01G441700.1	Wheat	cytosol	32.66	28.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400026205	EnsemblPlantsGene:PGSC0003DMG400010099	EntrezGene:102587749	GO:GO:0005575	GO:GO:0016020	InterPro:DUF1262
PANTHER:PTHR31050	PANTHER:PTHR31050:SF3	PFAM:PF06880	PGSC:PGSC0003DMG400010099	RefSeq:XP_006338293.1	UniParc:UPI000295CA2A
UniProt:M1AMU6	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010099]

Coordinates

chr2:-:45002321..45004275

Molecular Weight (calculated)

46178.2 Da

IEP (calculated)

8.692

GRAVY (calculated)

-0.522

Length

398 amino acids

Sequence
(BLAST)

001: MFATAPRSLY RNFPKALTKF PTNPPTITGY LVLTDEESEE MDTFCWGICK HSSITKLPFP QDRVLKVVHN PEFGEPSVHK VWFLPVLDQP IASGRYYVIK
101: AKGRHKGRAY TSWKEADMDS CCFDNSMNDL NPKPFNHKDP YQQFEICPYD LGGFYAKSVA YDGVPPKFLR KKGWHVNSIH SLKVNLKEAQ GLQLSSQPSD
201: SDTPELNIQA SSKRSVPIIL GKWYSPCVLV KEKKIKTKEQ MNKSLFYEVT LKCWWEQIFS CENVTRRNRA HVEVDARVRK LLTLISGTEA VKDEEGSGAF
301: VWFRVKEEYR NKCTLEKVGL HSGVIEKMRW IQERRGWFDG GESDVRVEGI EEIESENGYW RKFSCYVLVE SFVFRRMDGS LLINFNFKNT QKIVCQWE

Best Arabidopsis Sequence Match ( AT1G61600.1 )
(BLAST)

001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETE DTFCFGMCTR TKIEKLPLPQ DKILSVVHLD SSGNRETSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E

Arabidopsis Description

DUF1262 family protein (DUF1262) [Source:UniProtKB/TrEMBL;Acc:Q9SY90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.