Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15029 | Canola | cytosol, mitochondrion | 84.56 | 83.96 |
| Bra038594.1-P | Field mustard | nucleus | 84.32 | 75.37 |
| CDY26357 | Canola | mitochondrion | 83.37 | 74.52 |
| CDY48822 | Canola | cytosol | 32.78 | 65.71 |
| CDY47587 | Canola | nucleus | 26.6 | 61.2 |
| KRG93807 | Soybean | mitochondrion, nucleus | 46.32 | 48.03 |
| PGSC0003DMT400026205 | Potato | mitochondrion | 39.19 | 41.46 |
| Solyc02g089650.2.1 | Tomato | mitochondrion | 38.95 | 41.21 |
| AT1G13470.1 | Thale cress | cytosol | 36.58 | 40.63 |
| AT1G13480.1 | Thale cress | nucleus | 36.1 | 39.28 |
| AT1G13540.1 | Thale cress | cytosol | 34.92 | 38.58 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 35.15 | 38.54 |
| AT1G13530.1 | Thale cress | cytosol | 35.15 | 38.44 |
| AT1G13490.2 | Thale cress | cytosol | 34.2 | 37.7 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 34.2 | 37.7 |
| AT1G13510.1 | Thale cress | cytosol | 33.97 | 37.63 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 34.68 | 37.63 |
| AT1G13520.1 | Thale cress | cytosol | 34.44 | 37.47 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 33.73 | 37.08 |
| AT1G13550.1 | Thale cress | cytosol | 33.49 | 36.34 |
| AT1G13500.1 | Thale cress | cytosol | 33.25 | 36.27 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 34.92 | 35.42 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 33.97 | 35.14 |
| Os08t0413200-00 | Rice | cytosol | 34.44 | 34.44 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 28.98 | 32.53 |
| OQU80420 | Sorghum | cytosol | 28.27 | 32.08 |
| EES09009 | Sorghum | cytosol | 33.49 | 31.83 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 33.49 | 30.92 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 27.32 | 30.42 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 28.03 | 30.1 |
| Os08t0412800-01 | Rice | plasma membrane | 26.84 | 29.35 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 27.55 | 29.29 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 27.32 | 29.26 |
Protein Annotations
| MapMan:35.2 | EntrezGene:842456 | UniProt:A0A178WJ03 | ProteinID:AAD25550.1 | ProteinID:AEE33861.1 | ArrayExpress:AT1G61600 |
| EnsemblPlantsGene:AT1G61600 | RefSeq:AT1G61600 | TAIR:AT1G61600 | RefSeq:AT1G61600-TAIR-G | EnsemblPlants:AT1G61600.1 | TAIR:AT1G61600.1 |
| ncoils:Coil | InterPro:DUF1262 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | RefSeq:NP_176354.1 |
| ProteinID:OAP17505.1 | PFAM:PF06880 | PO:PO:0000293 | PO:PO:0009025 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF3 |
| UniProt:Q9SY90 | UniParc:UPI000009E0AE | SEG:seg | : | : | : |
Description
DUF1262 family protein (DUF1262) [Source:UniProtKB/TrEMBL;Acc:Q9SY90]
Coordinates
chr1:+:22729816..22731332
Molecular Weight (calculated)
48775.5 Da
IEP (calculated)
9.836
GRAVY (calculated)
-0.678
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETE DTFCFGMCTR TKIEKLPLPQ DKILSVVHLD SSGNRETSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.