Factsheet for AT1G13550.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26655	Canola	cytosol	83.51	82.65
Bra026900.1-P	Field mustard	cytosol	83.51	82.65
CDY16095	Canola	cytosol	82.99	81.93
AT1G13520.1	Thale cress	cytosol	57.99	58.14
AT1G13470.1	Thale cress	cytosol	56.44	57.78
AT1G13510.1	Thale cress	cytosol	55.41	56.58
AT1G13480.1	Thale cress	nucleus	55.41	55.56
AT1G13540.1	Thale cress	cytosol	54.38	55.38
AT1G13530.1	Thale cress	cytosol	54.64	55.06
AT1G13490.2	Thale cress	cytosol	54.12	54.97
AT1G13500.1	Thale cress	cytosol	53.61	53.89
PGSC0003DMT400019462	Potato	cytosol	43.3	42.53
VIT_01s0011g02320.t01	Wine grape	cytosol	41.75	41.43
PGSC0003DMT400019458	Potato	cytosol	35.57	40.83
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	41.49	40.55
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	40.98	40.25
KRH71102	Soybean	cytosol	38.92	39.53
KRH71091	Soybean	cytosol	39.95	39.14
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	33.76	38.87
Solyc05g010470.2.1	Tomato	cytosol	31.19	38.29
PGSC0003DMT400059315	Potato	cytosol	26.55	36.92
GSMUA_Achr5P27350_001	Banana	mitochondrion	34.79	34.79
GSMUA_Achr5P27360_001	Banana	mitochondrion	34.28	34.64
Os08t0413200-00	Rice	cytosol	37.11	34.2
AT1G61600.1	Thale cress	cytosol	36.34	33.49
GSMUA_Achr9P18410_001	Banana	cytosol	32.73	33.25
GSMUA_Achr3P06220_001	Banana	cytosol	32.73	33.16
Zm00001d050302_P001	Maize	cytosol, plastid	31.7	32.8
Os08t0413100-00	Rice	cytosol, plasma membrane	34.79	32.53
OQU80420	Sorghum	cytosol	30.15	31.54
Os08t0413500-00	Rice	cytosol, plasma membrane	32.47	30.96
Os08t0412700-01	Rice	cytosol, plasma membrane	30.15	30.95
TraesCS4B01G190200.1	Wheat	cytosol	31.19	30.56
TraesCS4D01G191600.1	Wheat	cytosol	30.93	30.53
EES09009	Sorghum	cytosol	34.79	30.47
TraesCS4A01G113900.1	Wheat	cytosol	30.41	30.1
Os08t0412800-01	Rice	plasma membrane	29.64	29.87
TraesCS7D01G441700.1	Wheat	cytosol	34.02	28.95

Protein Annotations

ArrayExpress:AT1G13550	EMBL:DQ446248	EnsemblPlants:AT1G13550.1	EnsemblPlantsGene:AT1G13550	EntrezGene:837916	GO:GO:0008150
InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2	PFAM:PF06880	ProteinID:AEE29032.1	RefSeq:AT1G13550
RefSeq:AT1G13550-TAIR-G	RefSeq:NP_172812.2	SEG:seg	TAIR:AT1G13550	TAIR:AT1G13550.1	Unigene:At.51598
UniParc:UPI0000D5BBF5	UniProt:Q3EDD3	MapMan:35.2	:	:	:

Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q3EDD3]

Coordinates

chr1:-:4636984..4638330

Molecular Weight (calculated)

45004.7 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.405

Length

388 amino acids

Sequence
(BLAST)

001: MYVTRRLSEY RKNPSELKKP PPEGPNSGVL VIQDEESLTT CCFGLCNEIF LRGLPFPQNA ALTVRRDDGG QNNTVHRDPV VFIPVLGQPL SSNRYYTYER
101: CGYYSRESST STEKEVERVT CCFCIRFNHV HMYKKPQPDP YDIHQQVVIT TTSSPSRCYY FAKPVAPNAL LPAFLMRQGW TIENSTSTLQ DFGLIDDAKG
201: LNLELRSKLP GLDISVVVGK WYVPFIFVKE GDIIDQVKIS MYYNMTLHQR WEEVFFYENV HNEDCVEVVV DVDLELQVIN IEGQKVSIET TNVDAKGIVW
301: FQVKDKKIGL RSVVVERMES EEESFGWKKV DGNRVTVKRL DRFEGGSSHW KSYKCYVLVE RFELKRMDES LVLTYEFRHA DKLRTIQY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.