Factsheet for PGSC0003DMT400019458

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 1
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400020128
PGSC0003DMT400044692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT1G13520.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT1G13520.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	90.24	76.83
PGSC0003DMT400019462	Potato	cytosol	83.43	71.39
PGSC0003DMT400059315	Potato	cytosol	52.37	63.44
VIT_01s0011g02320.t01	Wine grape	cytosol	54.14	46.8
KRH71102	Soybean	cytosol	51.18	45.29
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	51.48	44.05
AT1G13510.1	Thale cress	cytosol	45.56	40.53
KRH71091	Soybean	cytosol	47.04	40.15
AT1G13540.1	Thale cress	cytosol	43.79	38.85
AT1G13490.2	Thale cress	cytosol	43.2	38.22
AT1G13530.1	Thale cress	cytosol	42.9	37.66
CDY26653	Canola	cytosol	39.65	37.64
Bra026901.1-P	Field mustard	cytosol	42.31	37.63
CDY16094	Canola	cytosol	42.31	37.63
Bra016727.1-P	Field mustard	cytosol	43.2	37.63
CDY50164	Canola	cytosol	43.2	37.63
AT1G13520.1	Thale cress	cytosol	42.9	37.47
CDY21101	Canola	cytosol, mitochondrion	42.9	37.37
CDY30029	Canola	cytosol	41.72	37.01
Bra026902.1-P	Field mustard	cytosol	41.42	36.84
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	36.69	36.8
AT1G13480.1	Thale cress	nucleus	42.01	36.69
CDY26654	Canola	cytosol	41.12	36.58
CDY50165	Canola	cytosol	41.42	36.55
CDY21100	Canola	cytosol	41.72	36.53
AT1G13500.1	Thale cress	cytosol	41.72	36.53
GSMUA_Achr5P27350_001	Banana	mitochondrion	41.72	36.34
Bra016728.1-P	Field mustard	cytosol	41.42	36.27
Bra019719.1-P	Field mustard	cytosol	40.83	36.22
CDX98103	Canola	cytosol	39.65	36.22
CDY21099	Canola	cytosol	40.83	35.94
AT1G13550.1	Thale cress	cytosol	40.83	35.57
GSMUA_Achr5P27360_001	Banana	mitochondrion	39.94	35.16
AT1G13470.1	Thale cress	cytosol	38.76	34.56
GSMUA_Achr9P18410_001	Banana	cytosol	38.46	34.03
GSMUA_Achr3P06220_001	Banana	cytosol	38.17	33.68
CDY16095	Canola	cytosol	38.46	33.08
CDY50167	Canola	cytosol	37.87	33.07
Os08t0412700-01	Rice	cytosol, plasma membrane	36.69	32.8
Zm00001d050302_P001	Maize	cytosol, plastid	36.39	32.8
PGSC0003DMT400026205	Potato	mitochondrion	38.46	32.66
Bra026900.1-P	Field mustard	cytosol	37.87	32.65
CDY26655	Canola	cytosol	37.87	32.65
CDY16093	Canola	cytosol	32.84	32.27
TraesCS4A01G113900.1	Wheat	cytosol	36.69	31.63
TraesCS4D01G191600.1	Wheat	cytosol	36.69	31.55
TraesCS4B01G190200.1	Wheat	cytosol	36.39	31.06
CDY16092	Canola	cytosol	26.04	30.99
OQU80420	Sorghum	cytosol	32.54	29.65
Os08t0413200-00	Rice	cytosol	36.69	29.45
Os08t0412800-01	Rice	plasma membrane	32.84	28.83
Os08t0413100-00	Rice	cytosol, plasma membrane	35.21	28.67
Os08t0413500-00	Rice	cytosol, plasma membrane	34.02	28.26
TraesCS7D01G441700.1	Wheat	cytosol	35.8	26.54
EES09009	Sorghum	cytosol	34.32	26.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400019458	EnsemblPlantsGene:PGSC0003DMG400007520	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2	PFAM:PF06880
PGSC:PGSC0003DMG400007520	UniParc:UPI000295F36B	UniProt:M1AC47	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007520]

Coordinates

chr5:+:1251036..1252534

Molecular Weight (calculated)

39452.3 Da

IEP (calculated)

8.623

GRAVY (calculated)

-0.643

Length

338 amino acids

Sequence
(BLAST)

001: MYVTRSLSYY KKNPEALSLP PDGPNSGYLV IKDSESETYC CFGLCKNYEI MDLPLPQNKK LTIRYEMSNG QSTSVNRNSV MFIPVLNKPL SSNQYYAIKT
101: HGKNKGQAFT CSKEEDKKSF CFCRCVRDVK PKPLDPEEAL QQFEICLYDI CCKARGSFYA KSLAPDGFPP HFLRRKDGTE LKKQMKRSMF YEMTLEQRWE
201: QFFTCHNDKI NEGNSVLVDV ALDTQVVLIA GTDKAMWDDR NVVEGVIWFK SYGKDGNEVA SLGLRHEIVE RMKWEQQRGG WQNQGRIKQV EENRENSNGW
301: RRLSCYVLVE RFVLRRMDRS LVMTYDFKHI DKVKSIWD

Best Arabidopsis Sequence Match ( AT1G13480.1 )
(BLAST)

001: MYVTRRLSEY QKKPSELKLL PPEGPNSGIM VIQDEESQAT CCFGSCYEGR LKGLPFPQNV KLNAAYTSGG GEHQTTHLTP VVFIPVLDQP LSSNLYYVLQ
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD

Arabidopsis Description

At1g13480 [Source:UniProtKB/TrEMBL;Acc:Q56Y29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.