Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26654 | Canola | cytosol | 93.68 | 93.68 |
| CDY26653 | Canola | cytosol | 66.84 | 71.35 |
| CDY21100 | Canola | cytosol | 72.37 | 71.24 |
| CDY50165 | Canola | cytosol | 70.26 | 69.71 |
| CDY21099 | Canola | cytosol | 69.74 | 69.01 |
| CDY50167 | Canola | cytosol | 67.63 | 66.41 |
| CDY16092 | Canola | cytosol | 48.68 | 65.14 |
| CDY30029 | Canola | cytosol | 62.63 | 62.47 |
| CDY50164 | Canola | cytosol | 63.42 | 62.11 |
| CDX98103 | Canola | cytosol | 60.0 | 61.62 |
| CDY21101 | Canola | cytosol, mitochondrion | 62.37 | 61.08 |
| CDY26655 | Canola | cytosol | 54.47 | 52.81 |
| CDY16095 | Canola | cytosol | 54.47 | 52.67 |
| CDY16093 | Canola | cytosol | 45.0 | 49.71 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 46.05 | 44.76 |
| PGSC0003DMT400019462 | Potato | cytosol | 46.05 | 44.3 |
| KRH71102 | Soybean | cytosol | 44.21 | 43.98 |
| KRH71091 | Soybean | cytosol | 45.0 | 43.18 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 44.47 | 42.78 |
| PGSC0003DMT400019458 | Potato | cytosol | 37.63 | 42.31 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 37.37 | 42.14 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 43.42 | 41.56 |
| Solyc05g010470.2.1 | Tomato | cytosol | 33.42 | 40.19 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 39.74 | 39.32 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 39.74 | 38.92 |
| PGSC0003DMT400059315 | Potato | cytosol | 27.63 | 37.63 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 37.37 | 37.08 |
| CDY15029 | Canola | cytosol, mitochondrion | 41.32 | 37.03 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 36.84 | 36.65 |
| Os08t0413200-00 | Rice | cytosol | 40.0 | 36.1 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 35.26 | 35.73 |
| CDY48822 | Canola | cytosol | 19.74 | 35.71 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 35.26 | 35.45 |
| OQU80420 | Sorghum | cytosol | 34.47 | 35.31 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 36.32 | 33.91 |
| Os08t0412800-01 | Rice | plasma membrane | 33.95 | 33.51 |
| CDY26357 | Canola | mitochondrion | 41.32 | 33.33 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 34.21 | 33.16 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 34.21 | 32.83 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 33.95 | 32.82 |
| CDY47587 | Canola | nucleus | 15.79 | 32.79 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 35.79 | 32.77 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 39.21 | 32.68 |
| EES09009 | Sorghum | cytosol | 36.58 | 31.38 |
Protein Annotations
| EnsemblPlants:CDY16094 | EnsemblPlantsGene:GSBRNA2T00090507001 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PFAM:PF06880 |
| ProteinID:CDY16094 | ProteinID:CDY16094.1 | SEG:seg | UniParc:UPI0004EEE827 | UniProt:A0A078FT56 | MapMan:35.2 |
Description
BnaC08g40290DBnaC08g40290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT56]
Coordinates
chrLK032060:-:570492..572581
Molecular Weight (calculated)
44270.4 Da
IEP (calculated)
6.199
GRAVY (calculated)
-0.598
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRRLSEY QRNPLELEQR PPEGPNSGVL VIQDEESRPL SCFGLCYGQD LKGLPFPQNA KLTVSYSDGD DSYHDPVLFI PVLDQPLSSN CYYVIIRRGK
101: HSGEASESAK EEDRVPCCFC FNYVPEAKPR QADPYDIYQQ FAIHQRKSYY YSATSVAPDG VPPWFLKRKN WRVGYSTSQD FGLIDDAKGI NTMRRSKLPG
201: DFNTSVVVGK WYVPFIFVKE RDAKAQIKRS TYYSMTLRQS WEEVYSCWKV NYNEQDREVV VDVEVESELV KLEGQVIGKE TRGVDENGVV WFEIAGKKIG
301: LRSMVVERMK WEEERFGWSK ETDDIKSRIK RSEIFDGNAM LWQSYKCYVL VESFELKRMD GSLVLTFEFR HVDKLKSKWD
101: HSGEASESAK EEDRVPCCFC FNYVPEAKPR QADPYDIYQQ FAIHQRKSYY YSATSVAPDG VPPWFLKRKN WRVGYSTSQD FGLIDDAKGI NTMRRSKLPG
201: DFNTSVVVGK WYVPFIFVKE RDAKAQIKRS TYYSMTLRQS WEEVYSCWKV NYNEQDREVV VDVEVESELV KLEGQVIGKE TRGVDENGVV WFEIAGKKIG
301: LRSMVVERMK WEEERFGWSK ETDDIKSRIK RSEIFDGNAM LWQSYKCYVL VESFELKRMD GSLVLTFEFR HVDKLKSKWD
001: MYVTRRLSEY QRNRSELPES PNSGVLIIQD EESRPTCCFG SCYRATLKGL PFPQNANLIV SESRIFLNQT ITYIDPVVFI PVLDQPLSSN RYYVIKRGGK
101: HSGKASANAK EEDRVPCCFC FSYVPEAKPQ EADPNDIYQQ FQIHQKRSSS RYYTATSVAP NGKPPEFLKR KYWNAEYSTS EDFGLKDDAK GIYTEIRSEL
201: PSDFNTSVVV GKWYVPFIFV KEGNAKDQLK SSAYYSMILL QRWEEVYSCE NAYNENREVV VDVEVEPEVV KLEGQEIGKN TKRVDENGVF WFAVAEKRIG
301: LRSVVMERMK WEEERFGWKI EPQRAVVKKS ERFNGGGSNW KSYRCYVLVE SFELRRKDKS LVLTFEFKHV DKLRTKWES
101: HSGKASANAK EEDRVPCCFC FSYVPEAKPQ EADPNDIYQQ FQIHQKRSSS RYYTATSVAP NGKPPEFLKR KYWNAEYSTS EDFGLKDDAK GIYTEIRSEL
201: PSDFNTSVVV GKWYVPFIFV KEGNAKDQLK SSAYYSMILL QRWEEVYSCE NAYNENREVV VDVEVEPEVV KLEGQEIGKN TKRVDENGVF WFAVAEKRIG
301: LRSVVMERMK WEEERFGWKI EPQRAVVKKS ERFNGGGSNW KSYRCYVLVE SFELRRKDKS LVLTFEFKHV DKLRTKWES
Arabidopsis Description
Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13470]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.