CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G61600.1	Thale cress	cytosol	48.03	46.32
CDY15029	Canola	cytosol, mitochondrion	47.29	45.28
KRH71102	Soybean	cytosol	41.38	43.98
Solyc02g089650.2.1	Tomato	mitochondrion	39.9	40.7
PGSC0003DMT400026205	Potato	mitochondrion	39.9	40.7
KRH71091	Soybean	cytosol	39.66	40.66
Bra038594.1-P	Field mustard	nucleus	46.55	40.13
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	33.0	39.76
CDY26357	Canola	mitochondrion	45.81	39.49
CDY48822	Canola	cytosol	20.2	39.05
GSMUA_Achr5P27360_001	Banana	mitochondrion	36.21	38.28
GSMUA_Achr3P06220_001	Banana	cytosol	35.96	38.12
GSMUA_Achr9P18410_001	Banana	cytosol	35.71	37.96
GSMUA_Achr5P27350_001	Banana	mitochondrion	35.96	37.63
Os08t0413100-00	Rice	cytosol, plasma membrane	37.68	36.87
Os08t0413500-00	Rice	cytosol, plasma membrane	36.95	36.85
Os08t0413200-00	Rice	cytosol	37.19	35.87
CDY47587	Canola	nucleus	16.01	35.52
Zm00001d050302_P001	Maize	cytosol, plastid	31.03	33.6
Os08t0412700-01	Rice	cytosol, plasma membrane	30.05	32.28
Os08t0412800-01	Rice	plasma membrane	30.54	32.21
OQU80420	Sorghum	cytosol	28.82	31.54
TraesCS4A01G113900.1	Wheat	cytosol	29.8	30.87
EES09009	Sorghum	cytosol	33.5	30.7
TraesCS4B01G190200.1	Wheat	cytosol	29.56	30.3
TraesCS4D01G191600.1	Wheat	cytosol	29.31	30.28
TraesCS7D01G441700.1	Wheat	cytosol	33.5	29.82

Protein Annotations

EMBL:ACUP02011629	EnsemblPlants:KRG93807	EnsemblPlantsGene:GLYMA_19G042500	EntrezGene:100811822	GO:GO:0005575	GO:GO:0016020
InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF3	PFAM:PF06880	ProteinID:KRG93807	ProteinID:KRG93807.1
SEG:seg	UniParc:UPI000233E342	UniProt:I1N6L3	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr19:-:6199179..6202156

Molecular Weight (calculated)

46886.9 Da

IEP (calculated)

9.504

GRAVY (calculated)

-0.614

Length

406 amino acids

Sequence
(BLAST)

001: MYVTRPLSMY RRSPSTLSMP PPDGPYSGYL VITDEEAEAE DTCCWRLCRR KKVKKLPFPQ DKIFSVTHAS EYEQTSSTKV WFLPVPDHPL ASNRYYVIRA
101: KGRQKGKAYK CSREADIVTC CFTDILNDQR PKPFNLKDLY QIFKIHSHQS GGFFARSITP DGIPPSFLRK KGWRIRTSGS YRSCKLSEAL GVDAPLREKL
201: PDFNFPISRK RSPPVTVGRW YCPFIFVRDN GTRVKHQMKK SMYYSMTLEQ RWEEVYTCGN DHHHEKSDEG DDNGGGGGGG VVIVNVCVER EVVLVSGMEA
301: TRNGSTDANG FFWYRAYDAY NKRRANVGLS SAIVEHMRWV QEAGGWAYGH GRERVVRVRE EARCQSEWLR FGCYVLVESF CLRTLDGKLV LRYDFRHTHK
401: VKCKWE

Best Arabidopsis Sequence Match ( AT1G61600.1 )
(BLAST)

001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETE DTFCFGMCTR TKIEKLPLPQ DKILSVVHLD SSGNRETSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E

Arabidopsis Description

DUF1262 family protein (DUF1262) [Source:UniProtKB/TrEMBL;Acc:Q9SY90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.